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KEY POLICY INSIGHTSSocio-economic issues must be addressed simultaneously to agree in theoretical issues for the management of extant and new protected areas.An increase in the area covered by protected areas does not guarantee biodiversity conservation.The global development model, based on economic growth, is the major impediment to biodiversity conservation.

Necromysis a genus of sigmodontine rodent that inhabits grasslands and scrublands in South America. Eight extant species are recognized in the genus; one of these is Necromys lactens, which inhabits high-elevation grasslands in the Yungas from south-central Bolivia to northwestern Argentina. Morphological variation in N. lactenshas been recognized by the description of three nominal forms. Geographically structured genetic diversity also has been observed, but a thorough revision of these nominal forms within an integrative framework has yet to be performed. We conducted a phylogeographic assessment based on an 801 base-pair fragment of the cytochrome-bgene that guided morphometric analyses (univariate and multivariate comparisons) of patterns of geographic variation in the species, and the distinction of its nominal forms. Haplotypes of N. lactensform a well-supported and geographically structured clade. Within it, there are two main clades; haplotypes from the northern range form a well-supported clade, sister and allopatric to a weakly supported southern clade, which includes variants collected at or near the type localities of three nominal forms. In turn, both main clades are composed by two allopatric subclades. Morphometric analyses indicated no differences in shape of the skull among the three nominal forms or between the recovered clades and subclades. Taking together all the available evidence, we consider N. lactensto be a monotypic species.Necromyses un género de roedor sigmodontino que habita los pastizales y arbustales de América del Sur. Se reconocen ocho especies actualmente en existencia en el género; una de ellas, Necromys lactens, habita pastizales de altura en las Yungas, desde el centro-sur de Bolivia hasta el noroeste de Argentina. Se ha reconocido variación morfológica en N. lactenscon base en descripciones de tres formas nominales; también se ha observado diversidad genética geográficamente estructurada, pero una revisión exhaustiva de esas formas nominales dentro de un esquema integrativo aún no se ha llevado a cabo. Realizamos una evaluación filogeográfica basada en un fragmento de 801 pares de bases del gen citocromo bque orientó análisis morfométricos (comparaciones univariadas y multivariadas) respecto al patrón geográfico de variación de la especie y la distinción de sus formas nominales. Los haplotipos de N. lactensforman un clado bien apoyado y geográficamente estructurado. Dentro de este clado, los haplotipos del norte de su área de distribución forman un clado bien apoyado que es hermano y alopátrico con respecto de un clado austral débilmente apoyado, el cual incluye variantes colectadas en las localidades tipo de las tres formas nominales o sus cercanías. A su vez, ambos clados principales están compuestos por dos sub-clados alopátricos. Los análisis morfométricos no revelaron diferencias en la forma del cráneo entre las tres formas nominales ni entre los clados y sub-clados recuperados. Teniendo en cuenta toda la evidencia disponible, consideramos que N. lactenses una especie monotípica.

A taxonomic framework for South American cottontail rabbits (Lagomorpha: Leporidae: Sylvilagus) was recently published by Diersing and Wilson (2017). Although we agree with some of its taxonomic conclusions (e.g., species status for S. apollinarisand S. fulvescens), we disagree with others. We provide herein evidence supporting S. andinusas a valid species based on morphological characters and novel molecular data. We also provide details of the morphological characters of S. apollinarisand S. fulvescensthat support separating these from S. brasiliensis. We adduce data suggestive to the effect that—absent any type material—S. defilippiis at best a nomen dubium. Finally, we provide evidence in support of recognizing additional Neotropical species of Sylvilagus.Un esquema taxonómico para los conejos sudamericanos (Lagomorpha: Leporidae: Sylvilagus) fue recientemente publicado por Diersing y Wilson (2017). Aunque estamos de acuerdo con algunas de sus conclusiones (por ejemplo: estatus de especie válida para S. apollinarisy S. fulvescens), no estamos de acuerdo con las restantes conclusiones taxonómicas. Aportamos aquí pruebas convincentes sobre la característica naturaleza de los caracteres morfológicos y moleculares de S. andinus, pruebas que esgrimimos en apoyo de la hipótesis que esta última es una especie válida, así confirmando su escisión de S. brasiliensis. Proporcionamos detalles de los caracteres morfológicos de S. apollinarisy S. fulvescensque confirman la decisión taxonómica de asimismo separarlos de S. brasiliensis. Proporcionamos datos en aditamento que indican que a falta de cualquier material tipo para S. defilippi, este nombre es en el mejor de los casos un nomen dubium. Finalmente, ofrecemos datos y evidencia apoyando nuestras decisiones de reconocer un mayor número de especies Neotropicales de Sylvilagusque previamente se conocían.

Two subspecies of Andinomys edaxare currently recognized. Andinomys e. edaxranges from southern Perú to northernmost northwestern Argentina and A. e. lineicaudatusis mainly distributed in southern northwestern Argentina. However, some workers have recognized both taxa as distinct species, stating that A. edaxis restricted to Puna and Prepuna habitats between 2,000 and 4,800 m elevation, whereas A. lineicaudatusoccurs in Yungas forest below 2,500 m. We assessed the taxonomic status of both forms through an integrative approach including morphological (discrete skin and skull characters), morphometric (univariate and multivariate), geographic-environmental niche modeling (Mahalanobis Typicalities), and molecular (Bayesian analysis of cytochrome-bgene sequences) analyses. We did not find characters that consistently differentiated skins and skulls of the 2 forms. The morphometric analysis indicated that lineicaudatusis, on average, larger than edaxfor some measurements, but only 2 (alveolar width and occipital condyle width) differed significantly between forms. No group of specimens was clearly segregated in the PCA morphospace. Distribution models obtained separately for each taxon do not offer a better fit to the known distribution than models based on the combined data sets. We documented coincident environmental variables as relevant in the model building of edaxand lineicaudatus, noting some segregation in elevation, but similar habitat suitability for the remainder of the environmental variables. The geographic continuity between niche models of edaxand lineicaudatuswas clear but specimens morphologically assignable to each of the nominal forms were not found in areas of overlap. The phylogenetic analyses recovered a polytomy of 4 allopatric and genetically divergent clades, which also failed to support the taxonomic hypothesis of 2 species. Based on all available evidence, we conclude that Andinomysconsists of a single species. Nevertheless, observed genetic divergences among clades and their geographic distribution indicate that past events probably fragmented populations of A. edax.Actualmente se reconocen 2 subespecies de Andinomys edax. Andinomys e. edaxse extiende desde el extremo sur de Perú hasta el extremo norte del noroeste argentino y A. e. lineicaudatusse distribuye principalmente en el extremo sur del noroeste argentino. Sin embargo, algunos autores consideran a ambos taxones como especies diferentes, restringiendo a A. edaxa ambientes de Puna y Prepuna entre 2000 y 4800 m de altitud, y a A. lineicaudatusa regiones de Yungas por debajo de 2500 m. Evaluamos el estatus taxonómico de ambas formas nominales a través de una aproximación integrativa que incluyó análisis morfológicos (caracteres discretos de piel y cráneo), morfométricos (univariados y multivariados), de modelado de nicho geográfico y ambiental (Mahalanobis Typicalities), y moleculares (análisis Bayesianos de secuencias del gen citocromo-b). No encontramos caracteres que permitan consistentemente diferenciar las pieles y cráneos de ambas formas. El análisis morfométrico indicó que lineicaudatuses, en promedio, más grande que edaxpara algunas de las medidas consideradas, pero solo 2 de ellas (ancho alveolar y ancho del cóndilo occipital) fueron significativamente diferentes entre las 2 formas. Ningún grupo de especímenes se separó claramente en el espacio morfológico del ACP. Los modelos de distribución obtenidos para cada taxón no evidenciaron un mejor ajuste a la distribución conocida que el modelo basado en los datos agrupados. Documentamos variables ambientales relevantes coincidentes en la construcción de los modelos de edaxy lineicaudatus, observando alguna segregación en altitud, pero similar idoneidad de hábitat para el resto de las variables ambientales. La continuidad geográfica entre los modelos de distribución de edaxy lineicaudatusfue clara pero no observamos especímenes morfológicamente asignables a cada una de las formas nominales en la zona de solapamiento. El análisis filogenético recuperó una politomía de 4 clados alopátridos genéticamente divergentes, lo cual no apoya la hipótesis taxonómica de 2 especies válidas. Sobre la base de toda la evidencia, concluimos que Andinomysconsiste de una sola especie. Sin embargo, las divergencias genéticas observadas entre clados y su distribución geográfica indican que eventos del pasado probablemente fragmentaron las poblaciones de A. edax.

A new species of rodent is added to the highly diverse genus Oecomys(Cricetidae, Sigmodontinae, Oryzomyini) based on specimens collected in the Argentinian provinces of Chaco and Formosa. The new species is characterized by a derived carotid circulatory pattern, a feature shared with O. concolor, O. mamorae, and O. sydandersoni. A unique combination of morphological, morphometric, and molecular characters, however, provides unambiguous evidence of its validity as a separate entity. Individuals of the new species are larger than other representatives of Oecomys, and their skulls have wide and cuneate interorbital regions with well-developed supraorbital shelves, long incisive foramina, long palates, absent alisphenoid struts, and broad Eustachian tubes. This new Oecomysappears to be endemic to the Humid Chaco, an ecoregion listed as Vulnerable due to the human impact. Preliminary observations suggest that several specimens from Eastern Paraguay and the Brazilian Pantanal could also be assigned to the new species described herein.Una nueva especie es adicionada al altamente diverso género de roedores Oecomys(Cricetidae, Sigmodontinae, Oryzomyini), sobre la base de especímenes coleccionados en las provincias Argentinas de Chaco y Formosa. La nueva especie se caracteriza por un patrón de circulación carotídea derivado, un rasgo compartido con O. concolor, O. mamoraey O. sydandersoni. Sin embargo, la combinación única de caracteres morfológicos, morfométricos y moleculares provee evidencia inequívoca sobre su validez como una entidad separada. Individuos de la nueva especie son de mayor tamaño en comparación con otros Oecomysy sus cráneos tienen una región interorbitaria ancha y acuñada con plataformas supraorbitarias bien desarrolladas, forámenes incisivos largos, paladares largos, ausencia de las barras alisfenoideas y tubos de Eustaquio anchos. Este nuevo Oecomysparece ser endémico del Chaco Húmedo, una ecorregión considerada como Vulnerable debido al impacto antrópico. Observaciones preliminares sugieren que varios especímenes de Paraguay Oriental y del Pantanal Brasilero podrían también ser asignados a la nueva especie aquí descrita.

Abstract: Geographical variation in morphometric characters in heteromyid rodents has often correlated with climate gradients. Here, we used the long-term database of rodents trapped in the Sevilleta National Wildlife Refuge in New Mexico, USA to test whether significant annual changes in external morphometric characters are observed in a region with large variations in temperature and precipitation. We looked at the relationships between multiple temperature and precipitation variables and a number of morphological traits (body mass, body, tail, hind leg, and ear length) for two heteromyid rodents, Dipodomys merriami and Perognathus flavescens. Because these rodents can live multiple years in the wild, the climate variables for the year of the capture and the previous 2 years were included in the analyses. Using multiple linear regressions, we found that all of our morphometric traits, with the exception of tail length in D. merriami, had a significant relationship with one or more of the climate variables used. Our results demonstrate that effects of climate change on morphological traits occur over short periods, even in noninsular mammal populations. It is unclear, though, whether these changes are the result of morphological plasticity or natural selection.

Field mice of the genus Calomysare small, mostly granivorous rodents common to several habitats in South America. To date, phylogenies for the genus have been proposed on the basis of morphological, chromosomal, and biochemical data, often with contradictory results due to incomplete species sampling or methodological shortcomings. In this paper, we propose relationships among 10 species of Calomysbased on the complete cytochrome bgene sequence. Our analyses show that Calomysis constituted by two major clades, one mostly associated with mountain habitats with subsequent invasions to lowland habitats and another with species restricted to lowland habitats both north and south of the Amazon basin. The evolution of the genus was likely accompanied by a reduction of chromosome diploid numbers that occurred independently in each of the two evolutionary lineages. A “clock” calibrated on the split between Auliscomysand Loxodontomyssuggests that the almost nonexistent fossil record for the genus greatly underestimates divergence times among its species.

We describe a new living genus and species of Sigmodontinae currently only known from the Brazilian National Park Sempre Vivas, Minas Gerais State. This rodent is characterized by a unique combination of traits that include, among others, a long tail, with its distal tip (approximately 2.5 to 5 cm) entirely white; skull with domed profile; long rostrum with an incipient rostral tube; and noticeable small brachyodont molars with reduced mesolophs and mesostyles present on the 1st and 2nd upper molars. Cladistic analyses of molecular (1 mitochondrial and 1 nuclear marker) and morphological characters indicate that the new genus belongs to the Phyllotini and is sister to the remainder genera of this tribe. However, contrary to other known phyllotines, the new genus shows vestigial mesolophs and mesostyles. Phyllotines are widespread in open areas, in particular desert and semideserts, mostly in the western portion of South America. The new genus described herein expands the diversity of the tribe and suggests an ancient event of diversification in eastern Brazil.

Three species of Mexican deer mice of the Peromyscus mexicanus species group (P. grandis, P. guatemalensis, and P. zarhynchus) were characterized morphologically and genetically to test hypothesized concepts of species limits. We investigated if previously proposed phenetic relationships among these 3 taxa were supported by morphometric and genetic data. Analyses of nongeographic and geographic variation for individuals from 36 localities in Guatemala and southeastern Mexico were conducted to assay morphologic and geographic boundaries. In addition, 35 mitochondrial cytochrome-b gene sequences were analyzed using maximum-parsimony and Bayesian inference methods to determine relationships among the 3 taxa. This study based on comparisons to type specimens provided support for the presence of 3 morphologically and genetically distinct units. Our analyses suggest that P. grandis and P. guatemalensis are more closely related to each other than either is to P. zarhynchus, rejecting existing hypotheses that suggest that P. zarhynchus and P. grandis are phenetically more similar. The results of this study depict relationships among other members of the P. mexicanus group and patterns of speciation and biogeography and allow identification of regionally important phylogeographic units in Mesoamerica.

As presently recognized, the genus Galea is composed of 3 species, G. musteloides, G. flavidens, and G. spixii. The most widely distributed species is G. musteloides (the common yellow-toothed cavy), ranging from southern Peru to southern Argentina and from sea level to over 4,000 m elevation. Our current taxonomic and systematic understanding of Galea is based primarily on morphological studies that have been limited in both taxonomic and geographic sampling. In this study phylogenetic analyses of sequences from the cytochrome-b gene were used to test hypotheses related to the content, limits, and systematic relationships within G. musteloides. Our data support restricting G. musteloides to the highlands of northwestern Bolivia, southeastern Peru, and extreme northeastern Chile. We elevate G. leucoblephara Burmeister, 1861, for populations occupying the lowlands of Bolivia and Paraguay to central Argentina, and we elevate G. comes Thomas, 1919, for populations from the Andes of southern Bolivia and northern Argentina. Our results also suggest the presence of a previously unrecognized form at midelevations in the southern Bolivian Andes. We find support for treating G. spixii campicola as a junior synonym of G. l. demissa and G. monasteriensis as a junior synonym of G. musteloides boliviensis. Most of the evolution of the taxa within the G. musteloides complex appears to have occurred in the Prepuna biogeographic province, with 2 independent vicariant events culminating in the separation of the G. musteloides, G. comes, and G. leucoblephara clades. Dating estimates suggest a late Miocene divergence between G. spixii and the G. musteloides group, followed by species-level divergence within the G. musteloides group during the Pliocene.

We present the most comprehensive systematic study to date of Necromys, a rodent genus distributed in open areas north and south of Amazonia and in Andean grasslands. The study is based on sequences of the cytochrome-b gene that were analyzed by parsimony and Bayesian approaches. The analyses include sequences of 62 specimens from 51 localities from Argentina, Bolivia, Brazil, Colombia, Paraguay, Peru, Uruguay, and Venezuela, representing all but 1 of the species currently recognized in the genus. Necromys was recovered as a monophyletic group and we found a large polytomy at its base that involves 3 lineages. One, represented by the Andean N. lactens, shows a marked phylogeographic pattern. The 2nd clade is formed by N. urichi from the northern grasslands of South America and N. amoenus from the central Andes. Results suggest that each of these taxa may represent more than 1 biological species. The 3rd clade is formed by lowland species found south of Amazonia. Within this clade N. obscurus is sister to the remaining species. Haplotypes recovered from specimens assigned to N. benefactus, N. temchuki, and N. lasiurus form a clade, but these taxa do not form reciprocally monophyletic groups, nor does this large clade possess geographic structure. These genealogical results, discussed in the context of genetic variation, are the basis of taxonomic (e.g., N. benefactus and N. temchuki are regarded as junior synonyms of N. lasiurus) and biogeographic considerations.

We predicted that more-fragmented habitats are associated with lower diversity of small mammals and higher densities of populations of rodents that are hosts of hantaviruses. We compared diversity and distribution of small mammals that are either hosts or nonhosts of hantaviruses in 6 Panamanian national parks and adjacent areas with varying degree of human impacts. We sampled forest, edge, and anthropogenically disturbed habitats. The generalist rodents Oligoryzomys fulvescens (reservoir of Choclo virus) and Zygodontomys brevicauda (reservoir of Calabazo virus) were more abundant in disturbed habitats, especially in smaller and more isolated patches, where population density and diversity of other rodent species was lowest. In contrast, these 2 species had lower abundances in larger forested areas with more nonreservoir species of small mammals. Our results suggest that the change in the natural environment resulting from tropical deforestation is increasing the abundance and distribution of species that are reservoirs for hantaviruses. Therefore, it is likely that forest fragmentation has contributed to recent outbreaks of hantavirus pulmonary syndrome in tropical areas. Conservation of natural resources becomes all the more imperative, not only for protecting fauna and flora but also for human health.

Phylogeographic relationships were evaluated at the intraspecific level using nucleotide sequence data from the mitochondrial cytochrome b gene of representative specimens of “colilargo” (Oligoryzomys longicaudatus) from 31 localities, along its distributional range over a large part of the western Andes and southern Argentina. Based on approximately 1,000 base pairs (bp), we recognized a single species on both the Chilean and the Argentinean side as far as at least latitude 51°S, rejecting the subspecific distinctiveness of longicaudatus and philippi. We thus placed the latter in full synonymy with O. longicaudatus as earlier studies proposed, and enlarged its range as far as Torres del Paine, about 51°S. The occurrence of subspecies in this range is doubtful given the low sequence divergence values and the absence of significant associations between haplotypes and their geography. Additionally, we hypothesized that the entrance of this species into the Chilean side of the Andes mountains occurred through the Patagonian forests of southern Argentina, with further dispersal to the north from the south.