32 results on '"Sampson, Joshua N"'
Search Results
2. Measuring diet by metabolomics: a 14-d controlled feeding study of weighed food intake
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Playdon, Mary C., Tinker, Lesley F., Prentice, Ross L., Loftfield, Erikka, Hayden, Kathleen M., Van Horn, Linda, Sampson, Joshua N., Stolzenberg-Solomon, Rachael, Lampe, Johanna W., Neuhouser, Marian L., and Moore, Steven C.
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Metabolomics has the potential to enhance dietary assessment by revealing objective measures of many aspects of human food intake. Although metabolomics studies indicate that hundreds of metabolites are associated with dietary intake, correlations have been modest (e.g., r< 0.50), and few have been evaluated in controlled feeding studies.
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- 2024
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3. Polygenic risk scores, radiation treatment exposures and subsequent cancer risk in childhood cancer survivors
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Gibson, Todd M., Karyadi, Danielle M., Hartley, Stephen W., Arnold, Michael A., Berrington de Gonzalez, Amy, Conces, Miriam R., Howell, Rebecca M., Kapoor, Vidushi, Leisenring, Wendy M., Neglia, Joseph P., Sampson, Joshua N., Turcotte, Lucie M., Chanock, Stephen J., Armstrong, Gregory T., and Morton, Lindsay M.
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Survivors of childhood cancer are at increased risk for subsequent cancers attributable to the late effects of radiotherapy and other treatment exposures; thus, further understanding of the impact of genetic predisposition on risk is needed. Combining genotype data for 11,220 5-year survivors from the Childhood Cancer Survivor Study and the St Jude Lifetime Cohort, we found that cancer-specific polygenic risk scores (PRSs) derived from general population, genome-wide association study, cancer loci identified survivors of European ancestry at increased risk of subsequent basal cell carcinoma (odds ratio per s.d. of the PRS: OR = 1.37, 95% confidence interval (CI) = 1.29–1.46), female breast cancer (OR = 1.42, 95% CI = 1.27–1.58), thyroid cancer (OR = 1.48, 95% CI = 1.31–1.67), squamous cell carcinoma (OR = 1.20, 95% CI = 1.00–1.44) and melanoma (OR = 1.60, 95% CI = 1.31–1.96); however, the association for colorectal cancer was not significant (OR = 1.19, 95% CI = 0.94–1.52). An investigation of joint associations between PRSs and radiotherapy found more than additive increased risks of basal cell carcinoma, and breast and thyroid cancers. For survivors with radiotherapy exposure, the cumulative incidence of subsequent cancer by age 50 years was increased for those with high versus low PRS. These findings suggest a degree of shared genetic etiology for these malignancy types in the general population and survivors, which remains evident in the context of strong radiotherapy-related risk.
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- 2024
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4. The Influence of Preanalytical Biospecimen Handling on the Measurement of B Vitamers, Amino Acids, and Other Metabolites in Blood.
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Michels, Kara A., Weinstein, Stephanie J., Albert, Paul S., Black, Amanda, Brotzman, Michelle, Diaz-Mayoral, Norma A., Gerlanc, Nicole, Huang, Wen-Yi, Sampson, Joshua N., Shreves, Alaina, Ueland, Per Magne, Wyatt, Kathleen, Wentzensen, Nicolas, and Abnet, Christian C.
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- 2023
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5. Analysis of cervical HPV infections among unvaccinated young adult women to inform vaccine strategies in this age group: the Costa Rica HPV Vaccine Trial
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Sierra, Mónica S., Tsang, Sabrina H., Porras, Carolina, Herrero, Rolando, Sampson, Joshua N., Cortes, Bernal, Schussler, John, Wagner, Sarah, Carvajal, Loretto, Quint, Wim, Kreimer, Aimée R., Hu, Shangying, Rodriguez, Ana Cecilia, Romero, Byron, and Hildesheim, Allan
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IntroductionHuman papillomavirus (HPV) vaccines protect against incident HPV infections, which cause cervical cancer.ObjectivesWe estimated the prevalence and incidence of HPV infections in young adult women to understand the impact of an HPV vaccination programme in this population.MethodsWe collected cervical specimens from 6322 unvaccinated women, aged 18–37 years, who participated in the Costa Rica Vaccine Trial and its long-term follow-up. Women were followed for (median) 4.8 years and had (median) 4.0 study visits. Cervical specimens were tested for the presence/absence of 25 HPV genotypes. For each age band, we estimated the percentage of women with 1+ prevalent or 1+ incident HPV infections using generalised estimating equations. We also estimated the prevalence and incidence of HPV as a function of time since first sexual intercourse (FSI).ResultsThe model estimated HPV incident infections peaked at 28.0% (95% CI 25.3% to 30.9%) at age 20 years then steadily declined to 11.8% (95% CI 7.6% to 17.8%) at age 37 years. Incident oncogenic HPV infections (HPV16/18/31/33/35/39/45/51/52/56/58/59) peaked and then declined from 20.3% (95% CI 17.9% to 22.9%) to 7.7% (95% CI 4.4% to 13.1%); HPV16/18 declined from 6.4% (95% CI 5.1% to 8.1%) to 1.1% (95% CI 0.33% to 3.6%) and HPV31/33/45/52/58 declined from 11.0% (95% CI 9.3% to 13.1%) to 4.5% (95% CI 2.2% to 8.9%) over the same ages. The percentage of women with 1+ incident HPV of any, oncogenic, non-oncogenic and vaccine-preventable (HPV16/18, HPV31/33/45, HPV31/33/45/52/58, and HPV6/11) types peaked <1 year after FSI and steadily declined with increasing time since FSI (p for trends <0.001). We observed similar patterns for model estimated HPV prevalences.ConclusionYoung adult women may benefit from HPV vaccination if newly acquired vaccine-preventable oncogenic infections lead to cervical precancer and cancer. HPV vaccination targeting this population may provide additional opportunities for primary prevention.Trial registration numberNCT00128661.
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- 2023
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6. Metabolomic analysis of serum alpha-tocopherol among men in the Alpha-Tocopherol, Beta-Carotene Cancer Prevention (ATBC) Study
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Lawrence, Wayne R., Lim, Jung-Eun, Huang, Jiaqi, Sampson, Joshua N., Weinstein, Stephanie J., and Albanes, Demetrius
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Background/Objectives: The role of vitamin E in chronic disease risk remains incompletely understood, particularly in an un-supplemented state, and evidence is sparse regarding the biological actions and pathways involved in its influence on health outcomes. Identifying vitamin-E-associated metabolites through agnostic metabolomics analyses can contribute to elucidating the specific associations and disease etiology. This study aims to investigate the association between circulating metabolites and serum α-tocopherol concentration in an un-supplemented state. Subjects/Methods: Metabolomic analysis of 4,294 male participants was conducted based on pre-supplementation fasting serum in the Alpha-Tocopherol, Beta-Carotene Cancer Prevention Study. The associations between 1,791 known metabolites measured by ultra-high-performance LC–MS/GC–MS and HPLC-determined α-tocopherol concentration were estimated using multivariable linear regression. Differences in metabolite levels per unit difference in α-tocopherol concentration were calculated as standardized β-coefficients and standard errors. Results: A total of 252 metabolites were associated with serum α-tocopherol at the Bonferroni-corrected pvalue (p< 2.79 × 10
−5 ). Most of these metabolites were of lipid and amino acid origin, with the respective subclasses of dicarboxylic fatty acids, and valine, leucine, and isoleucine metabolism, being highly represented. Among lipids, the strongest signals were observed for linoleoyl-arachidonoyl-glycerol (18:2/20:4)[2](β= 0.149; p= 8.65 × 10−146 ) and sphingomyelin (D18:2/18:1) (β= 0.035; p= 1.36 × 10−30 ). For amino acids, the strongest signals were aminoadipic acid (β= 0.021; p= 5.01 × 10−13 ) and l-leucine (β= 0.007; p= 1.05 × 10−12 ). Conclusions: The large number of metabolites, particularly lipid and amino acid compounds associated with serum α-tocopherol provide leads regarding potential mechanisms through which vitamin E influences human health, including its role in cardiovascular disease and cancer.- Published
- 2022
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7. Reproducibility, Temporal Variability, and Concordance of Serum and Fecal Bile Acids and Short Chain Fatty Acids in a Population-Based Study.
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Farhat, Zeinab, Sampson, Joshua N., Hildesheim, Allan, Safaeian, Mahboobeh, Porras, Carolina, Cortés, Bernal, Herrero, Rolando, Romero, Byron, Vogtmann, Emily, Sinha, Rashmi, and Loftfield, Erikka
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Background: Bile acid (BA) and short chain fatty acid (SCFA) production is affected by diet and microbial metabolism. These metabolites may play important roles in human carcinogenesis. Methods: We used a fully quantitative targeted LC-MS/MS system to measure serum and fecal BA and SCFA concentrations in 136 Costa Rican adults at study baseline and 6-months. We randomly selected 50 participants and measured their baseline samples in duplicate. Our objective was to evaluate: Technical reproducibility; 6-month temporal variability; and concordance between sample type collected from the same individual at approximately the same time. Results: Technical reproducibility was excellent, with intraclass correlation coefficients (ICC) =0.83 for all BAs except serum tauroursodeoxycholic acid (ICC = 0.72) and fecal glycolithocholic acid (ICC = 0.66) and ICCs =0.81 for all SCFAs except serum 2-methylbutyric acid (ICC = 0.56) and serum isobutyric acid (ICC = 0.64). Temporal variability ICCs were generally low, but several BAs (i.e., deoxycholic, glycoursodeoxycholic, lithocholic, taurocholic, and tauroursodeoxycholic acid) and SCFAs (i.e., 2-methylbutyric, butyric, propionic, and valeric acid) had 6-month ICCs =0.44. The highest degree of concordance was observed for secondary and tertiary BAs. Conclusions: Serum and fecal BAs and SCFAs were reproducibly measured. However, 6-month ICCs were generally low, indicating that serial biospecimen collections would increase statistical power in etiologic studies. The low concordance for most serum and fecal metabolites suggests that consideration should be paid to treating these as proxies. [ABSTRACT FROM AUTHOR]
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- 2021
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8. Serum Metabolomic Response to Low- and High-Dose Vitamin E Supplementation in Two Randomized Controlled Trials.
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Jiaqi Huang, Hodis, Howard N., Weinstein, Stephanie J., Mack, Wendy J., Sampson, Joshua N., Mondul, Alison M., and Albanes, Demetrius
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Background: Vitamin E is an essential micronutrient and critical human antioxidant previously tested for cancer preventative effects with conflicting clinical trial results that have yet to be explained biologically. Methods: We examined baseline and on-trial serum samples for 154 men randomly assigned to receive 400 IU vitamin E (as alpha-tocopheryl acetate; ATA) or placebo daily in the Vitamin E Atherosclerosis Prevention Study (VEAPS), and for 100 men administered 50 IU ATA or placebo daily in the Alpha-Tocopherol, Beta-Carotene Cancer Prevention Study (ATBC). Over 970 metabolites were identified using ultrahigh-performance LC/MS-MS. Linear regression models estimated the change in serum metabolites of men supplemented with vitamin E versus those receiving placebo in VEAPS as compared with ATBC. Results: Serum alpha-carboxyethyl hydrochroman (CEHC) sulfate, alpha-tocopherol, and beta/gamma-tocopherol were significantly altered by ATA supplementation in both trials (all P values ≤5.1 × 10
-5 , the Bonferroni multiple comparisons corrected statistical threshold). Serum C22 lactone sulfate was significantly decreased in response to the high-dose vitamin E in VEAPS (β = -0.70, P = 8.1 × 10-6 ), but not altered by the low dose in ATBC (β = -0.17, P = 0.4). In addition, changes in androgenic steroid metabolites were strongly correlated with the vitamin E supplement-associated change in C22 lactone sulfate only in the VEAPS trial. Conclusions: We found evidence of a dose-dependent vitamin E supplementation effect on a novel C22 lactone sulfate compound that was correlated with several androgenic steroids. Impact: Our data add information on a differential hormonal response based on vitamin E dose that could have direct relevance to opposing prostate cancer incidence results from previous large controlled trials. [ABSTRACT FROM AUTHOR]- Published
- 2020
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9. Estrogen Metabolism in Postmenopausal Women Exposed In Utero to Diethylstilbestrol.
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Troisi, Rebecca, Hatch, Elizabeth E., Palmer, Julie R., Titus, Linda, Sampson, Joshua N., Xia Xu, and Hoover, Robert N.
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Background: Prenatal diethylstilbestrol (DES) exposure is associated with adverse reproductive outcomes and cancer of the breast and vagina/cervix in adult women. DES effects on estrogen metabolism have been hypothesized, but reproductive hormone concentrations and metabolic pathways have not been comprehensively described. Methods: Blood samples were provided by 60 postmenopausal women (40 exposed and 20 unexposed) who were participants in the NCI Combined DES Cohort Study, had never used hormone supplements or been diagnosed with cancer, had responded to the most recent cohort study questionnaire, and lived within driving distance of Boston University Medical School (Boston, MA). Parent estrogens and their metabolites were measured by high-performance liquid chromatography-tandem mass spectrometry. Age-adjusted percent changes in geometric means and associated 95% confidence intervals (CIs) between the exposed and unexposed were calculated. Results: Concentrations of total estrogens (15.3%; CI, -4.1-38.5) and parent estrogens (27.1%; CI, -8.2-76.1) were slightly higher in the DES-exposed than unexposed. Ratios of path2:parent estrogens (-36.5%; CI, -53.0 to -14.3) and path2:path16 (-28.8%; CI, -47.3-3.7) were lower in the DES exposed. These associations persisted with adjustment for total estrogen, years since menopause, body mass index, parity, and recent alcohol intake. Conclusions: These preliminary data suggest that postmenopausal women who were prenatally DES exposed may have relatively less 2 than 16 pathway estrogen metabolism compared with unexposed women. Impact: Lower 2 pathway metabolism has been associated with increased postmenopausal breast cancer risk and could potentially offer a partial explanation for the modest increased risk observed for prenatally DES-exposed women. [ABSTRACT FROM AUTHOR]
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- 2018
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10. Comparison of Collection Methods for Fecal Samples for Discovery Metabolomics in Epidemiologic Studies.
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Loftfield, Erikka, Vogtmann, Emily, Sampson, Joshua N., Moore, Steven C., Nelson, Heidi, Knight, Rob, Chia, Nicholas, and Sinha, Rashmi
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Background: The gut metabolome may be associated with the incidence and progression of numerous diseases. The composition of the gut metabolome can be captured by measuring metabolite levels in the feces. However, there are little data describing the effect of fecal sample collection methods on metabolomic measures. Methods: We collected fecal samples from 18 volunteers using four methods: no solution, 95% ethanol, fecal occult blood test (FOBT) cards, and fecal immunochemical test (FIT). One set of samples was frozen after collection (day 0), and for 95% ethanol, FOBT, and FIT, a second set was frozen after 96 hours at room temperature. We evaluated (i) technical reproducibility within sample replicates, (ii) stability after 96 hours at room temperature for 95% ethanol, FOBT, and FIT, and (iii) concordance of metabolite measures with the putative "gold standard," day 0 samples without solution. Results: Intraclass correlation coefficients (ICC) estimating technical reproducibility were high for replicate samples for each collection method. ICCs estimating stability at room temperature were high for 95% ethanol and FOBT (median ICC > 0.87) but not FIT (median ICC = 0.52). Similarly, Spearman correlation coefficients (r
s ) estimating metabolite concordance with the "gold standard" were higher for 95% ethanol (median rs = 0.82) and FOBT (median rs = 0.70) than for FIT (median rs = 0.40). Conclusions: Metabolomic measurements appear reproducible and stable in fecal samples collected with 95% ethanol or FOBT. Concordance with the "gold standard" is highest with 95% ethanol and acceptable with FOBT. Impact: Future epidemiologic studies should collect feces using 95% ethanol or FOBT if interested in studying fecal metabolomics. [ABSTRACT FROM AUTHOR]- Published
- 2016
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11. Effects of Exercise and Cardiorespiratory Fitness on Estrogen Metabolism in Postmenopausal Women.
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Matthews, Charles E., Sampson, Joshua N., Brenner, Darren R., Moore, Steven C., Courneya, Kerry S., Ziegler, Regina G., and Friedenreich, Christine M.
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Background: Lowering endogenous estrogen levels is one mechanism whereby physical activity may lower postmenopausal breast cancer risk. Several prospective studies have suggested that increased 2-hydroxylation of estrogens may also reduce postmenopausal breast cancer risk, but whether or not exercise alters estrogen metabolism through this mechanism is unclear. Methods: We measured total circulating concentrations of parent estrogens (estrone and estradiol) and 13 estrogen metabolites, including glucuronidated, sulfated, and unconjugated forms, by stable isotope dilution LC/MS-MS in 153 postmenopausal women randomized to 12 months of moderate-to-vigorous exercise and 153 controls. We also explored associations with cardiorespiratory fitness measured by treadmill. Results: Although women randomized to exercise averaged 178 minutes/week of exercise over 12 months, their cardiorespiratory fitness was 13% greater than controls at 12 months (P = 0.0001), and total estradiol was reduced by 10% (P = 0.04); there were no statistically significant effects of exercise on circulating concentrations of estrogen metabolites in the 2-, 4-, or 16-pathways, or on the 2-pathway/parent estrogens ratio. However, we observed a statistically significant association between increased fitness and reduced concentration of 2-pathway metabolites (P < 0.05). Conclusions: We found no evidence that 12 months of moderate-to-vigorous exercise or increased fitness changed estrogen metabolism in a way that might reduce breast cancer risk. Impact: The protective effect of exercise on postmenopausal breast cancer is unlikely to be mediated by changes in estrogen metabolism. [ABSTRACT FROM AUTHOR]
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- 2018
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12. The Influence of Preanalytical Biospecimen Handling on the Measurement of B Vitamers, Amino Acids, and Other Metabolites in Blood
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Michels, Kara A., Weinstein, Stephanie J., Albert, Paul S., Black, Amanda, Brotzman, Michelle, Diaz-Mayoral, Norma A., Gerlanc, Nicole, Huang, Wen-Yi, Sampson, Joshua N., Shreves, Alaina, Ueland, Per Magne, Wyatt, Kathleen, Wentzensen, Nicolas, and Abnet, Christian C.
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Introduction:Sample handling can influence biomarker measurement and introduce variability when combining data from multiple studies or study sites. To inform the development of blood collection protocols within a multisite cohort study, we directly quantified concentrations of 54 biomarkers in blood samples subjected to different handling conditions.Materials and Methods:We obtained serum, lithium heparin plasma, and EDTA plasma from 20 adult volunteers. Tubes of chilled whole blood were either centrifuged and processed within 2 hours of collection (the “reference standard”) or were stored with cool packs for 24 or 48 hours; centrifuged before and/or after this delay; or collected in tubes with/without gel separators. We used linear mixed models with random intercepts to estimate geometric mean concentrations and relative percent differences across the conditions.Results:Compared to the reference standard tubes, concentrations of many biomarkers changed after processing delays, but changes were often small. In serum, we observed large differences for B vitamers, glutamic acid (37% and 73% increases with 24- and 48-hour delays, respectively), glycine (12% and 23% increases), serine (16% and 27% increases), and acetoacetate (−19% and −26% decreases). Centrifugation timing and separator tube use did not affect concentrations of most biomarkers.Conclusion:Sample handling should be consistent across samples within an analysis. The length of processing delays should be recorded and accounted for when this is not feasible.
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- 2023
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13. Association of Leisure-Time Physical Activity With Risk of 26 Types of Cancer in 1.44 Million Adults
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Moore, Steven C., Lee, I-Min, Weiderpass, Elisabete, Campbell, Peter T., Sampson, Joshua N., Kitahara, Cari M., Keadle, Sarah K., Arem, Hannah, Berrington de Gonzalez, Amy, Hartge, Patricia, Adami, Hans-Olov, Blair, Cindy K., Borch, Kristin B., Boyd, Eric, Check, David P., Fournier, Agnès, Freedman, Neal D., Gunter, Marc, Johannson, Mattias, Khaw, Kay-Tee, Linet, Martha S., Orsini, Nicola, Park, Yikyung, Riboli, Elio, Robien, Kim, Schairer, Catherine, Sesso, Howard, Spriggs, Michael, Van Dusen, Roy, Wolk, Alicja, Matthews, Charles E., and Patel, Alpa V.
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IMPORTANCE: Leisure-time physical activity has been associated with lower risk of heart-disease and all-cause mortality, but its association with risk of cancer is not well understood. OBJECTIVE: To determine the association of leisure-time physical activity with incidence of common types of cancer and whether associations vary by body size and/or smoking. DESIGN, SETTING, AND PARTICIPANTS: We pooled data from 12 prospective US and European cohorts with self-reported physical activity (baseline, 1987-2004). We used multivariable Cox regression to estimate hazard ratios (HRs) and 95% confidence intervals for associations of leisure-time physical activity with incidence of 26 types of cancer. Leisure-time physical activity levels were modeled as cohort-specific percentiles on a continuous basis and cohort-specific results were synthesized by random-effects meta-analysis. Hazard ratios for high vs low levels of activity are based on a comparison of risk at the 90th vs 10th percentiles of activity. The data analysis was performed from January 1, 2014, to June 1, 2015. EXPOSURES: Leisure-time physical activity of a moderate to vigorous intensity. MAIN OUTCOMES AND MEASURES: Incident cancer during follow-up. RESULTS: A total of 1.44 million participants (median [range] age, 59 [19-98] years; 57% female) and 186 932 cancers were included. High vs low levels of leisure-time physical activity were associated with lower risks of 13 cancers: esophageal adenocarcinoma (HR, 0.58; 95% CI, 0.37-0.89), liver (HR, 0.73; 95% CI, 0.55-0.98), lung (HR, 0.74; 95% CI, 0.71-0.77), kidney (HR, 0.77; 95% CI, 0.70-0.85), gastric cardia (HR, 0.78; 95% CI, 0.64-0.95), endometrial (HR, 0.79; 95% CI, 0.68-0.92), myeloid leukemia (HR, 0.80; 95% CI, 0.70-0.92), myeloma (HR, 0.83; 95% CI, 0.72-0.95), colon (HR, 0.84; 95% CI, 0.77-0.91), head and neck (HR, 0.85; 95% CI, 0.78-0.93), rectal (HR, 0.87; 95% CI, 0.80-0.95), bladder (HR, 0.87; 95% CI, 0.82-0.92), and breast (HR, 0.90; 95% CI, 0.87-0.93). Body mass index adjustment modestly attenuated associations for several cancers, but 10 of 13 inverse associations remained statistically significant after this adjustment. Leisure-time physical activity was associated with higher risks of malignant melanoma (HR, 1.27; 95% CI, 1.16-1.40) and prostate cancer (HR, 1.05; 95% CI, 1.03-1.08). Associations were generally similar between overweight/obese and normal-weight individuals. Smoking status modified the association for lung cancer but not other smoking-related cancers. CONCLUSIONS AND RELEVANCE: Leisure-time physical activity was associated with lower risks of many cancer types. Health care professionals counseling inactive adults should emphasize that most of these associations were evident regardless of body size or smoking history, supporting broad generalizability of findings.
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- 2016
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14. Body Mass Index and Risk of Second Obesity-Associated Cancers After Colorectal Cancer: A Pooled Analysis of Prospective Cohort Studies.
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Gibson, Todd M., Yikyung Park, Robien, Kim, Shiels, Meredith S., Black, Amanda, Sampson, Joshua N., Purdue, Mark P., Beane Freeman, Laura E., Andreotti, Gabriella, Weinstein, Stephanie J., Albanes, Demetrius, Fraumeni Jr, Joseph F., Curtis, Rochelle E., Berrington de Gonzalez, Amy, and Morton, Lindsay M.
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- 2014
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15. Risk of Subsequent Malignant Neoplasms in Long-Term Hereditary Retinoblastoma Survivors After Chemotherapy and Radiotherapy.
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Wong, Jeannette R., Morton, Lindsay M., Tucker, Margaret A., Abramson, David H., Seddon, Johanna M., Sampson, Joshua N., and Kleinerman, Ruth A.
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- 2014
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16. Pooling Prospective Studies to Investigate the Etiology of Second Cancers.
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Black, Amanda, Gibson, Todd M., Shiels, Meredith S., Park, Yikyung, Robien, Kim, Albanes, Demetrius, Weinstein, Stephanie J., Beane Freeman, Laura E., Andreotti, Gabriella, Purdue, Mark P., Fraumeni, Joseph F., Hartge, Patricia, Tucker, Margaret A., Hoover, Robert N., Cerhan, James R., Zeleniuch-Jacquotte, Anne, Curtis, Rochelle E., Elena, Joanne, Sampson, Joshua N., and de Gonzalez, Amy Berrington
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The article focuses on use of pooling data from cohort studies of cancer incidences for investigating second cancer etiology. It mentions the study which reveals that second solid cancers in adults occur due to radiotherapy. It adds that second cancers cause morbidity and mortality among cancer survivors.
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- 2014
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17. Metabolomics in Epidemiology: Sources of Variability in Metabolite Measurements and Implications.
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Sampson, Joshua N., Boca, Simina M., Xiao Ou Shu, Stolzenberg-Solomon, Rachael Z., Matthews, Charles E., Hsing, Ann W., Yu Ting Tan, Bu-Tian Ji, Wong-Ho Chow, Qiuyin Cai, Da Ke Liu, Gong Yang, Yong Bing Xiang, Wei Zheng, Sinha, Rashmi, Cross, Amanda J., and Moore, Steven C.
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The article discusses the assessed variability of a large set of 385 metabolites and the determined implications of metabolites in epidemiologic studies. Topics covered include the highlights of the Shanghai Women's Health Study (SWHS) and Shanghai Men's Health Study (SMHS), the use of liquid chromatography/mass spectrometry (LC/MS) and gas chromatography/mass spectrometry (GC/MS) in analyzing the study samples, and the important role of metabolomics in large epidemiologic studies.
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- 2013
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18. Ring-Closing Metathesis of Olefinic Peptides: Design, Synthesis, and Structural Characterization....
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Blackwell, Helen E., Sadowsky, Jack D., Howard, Rebecca J., Sampson, Joshua N., Chao, Jeffery A., Steinmetz, Wayne E., O'Leary, Daniel J., and Grubbs, Robert H.
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- 2001
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19. Rationale and Design of the International Lymphoma Epidemiology Consortium (InterLymph) Non-Hodgkin Lymphoma Subtypes Project
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Morton, Lindsay M., Sampson, Joshua N., Cerhan, James R., Turner, Jennifer J., Vajdic, Claire M., Wang, Sophia S., Smedby, Karin E., de Sanjosé, Silvia, Monnereau, Alain, Benavente, Yolanda, Bracci, Paige M., Chiu, Brian C. H., Skibola, Christine F., Zhang, Yawei, Mbulaiteye, Sam M., Spriggs, Michael, Robinson, Dennis, Norman, Aaron D., Kane, Eleanor V., Spinelli, John J., Kelly, Jennifer L., Vecchia, Carlo La, Dal Maso, Luigino, Maynadié, Marc, Kadin, Marshall E., Cocco, Pierluigi, Costantini, Adele Seniori, Clarke, Christina A., Roman, Eve, Miligi, Lucia, Colt, Joanne S., Berndt, Sonja I., Mannetje, Andrea, de Roos, Anneclaire J., Kricker, Anne, Nieters, Alexandra, Franceschi, Silvia, Melbye, Mads, Boffetta, Paolo, Clavel, Jacqueline, Linet, Martha S., Weisenburger, Dennis D., and Slager, Susan L.
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Background Non-Hodgkin lymphoma (NHL), the most common hematologic malignancy, consists of numerous subtypes. The etiology of NHL is incompletely understood, and increasing evidence suggests that risk factors may vary by NHL subtype. However, small numbers of cases have made investigation of subtype-specific risks challenging. The International Lymphoma Epidemiology Consortium therefore undertook the NHL Subtypes Project, an international collaborative effort to investigate the etiologies of NHL subtypes. This article describes in detail the project rationale and design.Methods We pooled individual-level data from 20 case-control studies (17471 NHL cases, 23096 controls) from North America, Europe, and Australia. Centralized data harmonization and analysis ensured standardized definitions and approaches, with rigorous quality control.Results The pooled study population included 11 specified NHL subtypes with more than 100 cases: diffuse large B-cell lymphoma (N = 4667), follicular lymphoma (N = 3530), chronic lymphocytic leukemia/small lymphocytic lymphoma (N = 2440), marginal zone lymphoma (N = 1052), peripheral T-cell lymphoma (N = 584), mantle cell lymphoma (N = 557), lymphoplasmacytic lymphoma/Waldenström macroglobulinemia (N = 374), mycosis fungoides/Sézary syndrome (N = 324), Burkitt/Burkitt-like lymphoma/leukemia (N = 295), hairy cell leukemia (N = 154), and acute lymphoblastic leukemia/lymphoma (N = 152). Associations with medical history, family history, lifestyle factors, and occupation for each of these 11 subtypes are presented in separate articles in this issue, with a final article quantitatively comparing risk factor patterns among subtypes.Conclusions The International Lymphoma Epidemiology Consortium NHL Subtypes Project provides the largest and most comprehensive investigation of potential risk factors for a broad range of common and rare NHL subtypes to date. The analyses contribute to our understanding of the multifactorial nature of NHL subtype etiologies, motivate hypothesis-driven prospective investigations, provide clues for prevention, and exemplify the benefits of international consortial collaboration in cancer epidemiology.- Published
- 2014
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20. Medical History, Lifestyle, Family History, and Occupational Risk Factors for Mantle Cell Lymphoma: The InterLymph Non-Hodgkin Lymphoma Subtypes Project
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Smedby, Karin E., Sampson, Joshua N., Turner, Jennifer J., Slager, Susan L., Maynadié, Marc, Roman, Eve, Habermann, Thomas M., Flowers, Christopher R., Berndt, Sonja I., Bracci, Paige M., Hjalgrim, Henrik, Weisenburger, Dennis D., and Morton, Lindsay M.
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Background The etiology of mantle cell lymphoma (MCL), a distinctive subtype accounting for 2%–10% of all non-Hodgkin lymphoma, is not known.Methods We investigated associations with self-reported medical history, lifestyle, family history, and occupational risk factors in a pooled analysis of 557 patients with MCL and 13766 controls from 13 case–control studies in Europe, North America, and Australia. Odds ratios (ORs) and 95% confidence intervals (CIs) associated with each exposure were examined using multivariate logistic regression models.Results The median age of the MCL patients was 62 years and 76% were men. Risk of MCL was inversely associated with history of hay fever (OR = 0.63, 95% CI = 0.48 to 0.82), and the association was independent of other atopic diseases and allergies. A hematological malignancy among first-degree relatives was associated with a twofold increased risk of MCL (OR = 1.99, 95% CI = 1.39 to 2.84), which was stronger in men (OR = 2.21, 95% CI = 1.44 to 3.38) than women (OR = 1.61, 95% CI = 0.82 to 3.19). A modestly increased risk of MCL was also observed in association with ever having lived on a farm (OR = 1.40, 95% CI = 1.03 to 1.90). Unlike some other non-Hodgkin lymphoma subtypes, MCL risk was not statistically significantly associated with autoimmune disorders, tobacco smoking, alcohol intake, body mass index, or ultraviolet radiation.Conclusions The novel observations of a possible role for atopy and allergy and farm life in risk of MCL, together with confirmatory evidence of a familial link, suggest a multifactorial etiology of immune-related environmental exposures and genetic susceptibility. These findings provide guidance for future research in MCL etiology.- Published
- 2014
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21. Medical History, Lifestyle, Family History, and Occupational Risk Factors for Marginal Zone Lymphoma: The InterLymph Non-Hodgkin Lymphoma Subtypes Project
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Bracci, Paige M., Benavente, Yolanda, Turner, Jennifer J., Paltiel, Ora, Slager, Susan L., Vajdic, Claire M., Norman, Aaron D., Cerhan, James R., Chiu, Brian C. H., Becker, Nikolaus, Cocco, Pierluigi, Dogan, Ahmet, Nieters, Alexandra, Holly, Elizabeth A., Kane, Eleanor V., Smedby, Karin E., Maynadié, Marc, Spinelli, John J., Roman, Eve, Glimelius, Bengt, Wang, Sophia S., Sampson, Joshua N., Morton, Lindsay M., and de Sanjosé, Silvia
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Background Marginal zone lymphoma (MZL), comprised of nodal, extranodal, and splenic subtypes, accounts for 5%–10% of non-Hodgkin lymphoma cases. A detailed evaluation of the independent effects of risk factors for MZL and its subtypes has not been conducted.Methods Data were pooled from 1052 MZL cases (extranodal [EMZL] = 633, nodal [NMZL] = 157, splenic [SMZL] = 140) and 13766 controls from 12 case–control studies. Adjusted unconditional logistic regression was used to compute odds ratios (ORs) and 95% confidence intervals (CIs).Results Novel findings for MZL subtypes include increased risk for B-cell activating autoimmune conditions (EMZL OR = 6.40, 95% CI = 4.24 to 9.68; NMZL OR = 7.80, 95% CI = 3.32 to 18.33; SMZL OR = 4.25, 95% CI = 1.49 to 12.14), hepatitis C virus seropositivity (EMZL OR = 5.29, 95% CI = 2.48 to 11.28), self-reported peptic ulcers (EMZL OR = 1.83, 95% CI = 1.35 to 2.49), asthma without other atopy (SMZL OR = 2.28, 95% CI = 1.23 to 4.23), family history of hematologic cancer (EMZL OR = 1.90, 95% CI = 1.37 to 2.62) and of non-Hodgkin lymphoma (NMZL OR = 2.82, 95% CI = 1.33 to 5.98), permanent hairdye use (SMZL OR = 6.59, 95% CI = 1.54 to 28.17), and occupation as a metalworker (NMZL OR = 3.56, 95% CI = 1.67 to 7.58). Reduced risks were observed with consumption of any alcohol (EMZL fourth quartile OR = 0.48, 95% CI = 0.28 to 0.82) and lower consumption of wine (NMZL first to third quartile ORs < 0.45) compared with nondrinkers, and occupation as a teacher (EMZL OR = 0.58, 95% CI = 0.37 to 0.88).Conclusion Our results provide new data suggesting etiologic heterogeneity across MZL subtypes although a common risk of MZL associated with B-cell activating autoimmune conditions was found.- Published
- 2014
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22. Medical History, Lifestyle, Family History, and Occupational Risk Factors for Adult Acute Lymphocytic Leukemia: The InterLymph Non-Hodgkin Lymphoma Subtypes Project
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Skibola, Christine F., Slager, Susan L., Berndt, Sonja I., Lightfoot, Tracy, Sampson, Joshua N., Morton, Lindsay M., and Weisenburger, Dennis D.
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Background Acute lymphoblastic leukemia/lymphoma (ALL) in adults is a rare malignancy with a poor clinical outcome, and few reported etiologic risk factors.Methods We performed an exploratory pooled study of 152 ALL cases and 23096 controls from 16 case–control studies to investigate the role of medical history, lifestyle, family history, and occupational risk factors and risk of ALL. Age- race/ethnicity-, sex-, and study-adjusted odds ratios (ORs) and 95% confidence intervals (CIs) were estimated using logistic regression.Results An increased risk of ALL was found in those with a family history of a hematological malignancy (OR = 2.6, 95% CI = 1.22 to 5.54) and in leather (OR = 3.91, 95% CI = 1.35 to 11.35) and sewing/embroidery workers (OR = 2.92, 95% CI = 1.00 to 8.49). Consumers of alcohol had an increased risk of B-cell ALL (OR = 2.87, 95% CI = 1.18 to 6.95).Conclusions The small number of statistically significant risk factors identified out of the 112 variables examined could be chance findings and will require further replication to assess their role in the etiology of adult ALL.- Published
- 2014
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23. Medical History, Lifestyle, Family History, and Occupational Risk Factors for Peripheral T-Cell Lymphomas: The InterLymph Non-Hodgkin Lymphoma Subtypes Project
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Wang, Sophia S., Flowers, Christopher R., Kadin, Marshall E., Chang, Ellen T., Hughes, Ann Maree, Ansell, Stephen M., Feldman, Andrew L., Lightfoot, Tracy, Boffetta, Paolo, Melbye, Mads, Lan, Qing, Sampson, Joshua N., Morton, Lindsay M., Zhang, Yawei, and Weisenburger, Dennis D.
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Background Accounting for 10%–15% of all non-Hodgkin lymphomas in Western populations, peripheral T-cell lymphomas (PTCL) are the most common T-cell lymphoma but little is known about their etiology. Our aim was to identify etiologic risk factors for PTCL overall, and for specific PTCL subtypes, by analyzing data from 15 epidemiologic studies participating in the InterLymph Consortium.Methods A pooled analysis of individual-level data for 584 histologically confirmed PTCL cases and 15912 controls from 15 case–control studies conducted in Europe, North America, and Australia was undertaken. Data collected from questionnaires were harmonized to permit evaluation of a broad range of potential risk factors. Odds ratios (OR) and 95% confidence intervals (CI) were calculated using logistic regression.Results Risk factors associated with increased overall PTCL risk with a P value less than .05 included: a family history of hematologic malignancies (OR = 1.92, 95% CI = 1.30 to 2.84); celiac disease (OR = 17.8, 95% CI = 8.61 to 36.79); eczema (OR = 1.41, 95% CI = 1.07 to 1.85); psoriasis (OR = 1.97, 95% CI = 1.17 to 3.32); smoking 40 or more years (OR = 1.92, 95% CI = 1.41 to 2.62); and employment as a textile worker (ever) (OR = 1.58, 95% CI = 1.05 to 2.38) and electrical fitter (ever) (OR = 2.89, 95% CI = 1.41 to 5.95). Exposures associated with reduced overall PTCL risk included a personal history of allergies (OR = 0.69, 95% CI = 0.54 to 0.87), alcohol consumption (ever) (OR = 0.64, 95% CI = 0.49 to 0.82), and having ever lived or worked on a farm (OR = 0.72, 95% CI = 0.55% to 0.95%). We also observed the well-established risk elevation for enteropathy-type PTCL among those with celiac disease in our data. Conclusions Our pooled analyses identified a number of new potential risk factors for PTCL and require further validation in independent series.- Published
- 2014
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24. Medical History, Lifestyle, Family History, and Occupational Risk Factors for Lymphoplasmacytic Lymphoma/Waldenstrom's Macroglobulinemia: The InterLymph Non-Hodgkin Lymphoma Subtypes Project
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Vajdic, Claire M., Landgren, Ola, McMaster, Mary L., Slager, Susan L., Brooks-Wilson, Angela, Smith, Alex, Staines, Anthony, Dogan, Ahmet, Ansell, Stephen M., Sampson, Joshua N., Morton, Lindsay M., and Linet, Martha S.
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Background Lymphoplasmacytic lymphoma/Waldenström’s macroglobulinemia (LPL/WM), a rare non-Hodgkin lymphoma subtype, shows strong familial aggregation and a positive association with chronic immune stimulation, but evidence regarding other risk factors is very limited.Methods The International Lymphoma Epidemiology Consortium (InterLymph) pooled data from 11 predominantly population-based case–control studies from North America, Europe, and Australia to examine medical history, lifestyle, family history, and occupational risk factors for LPL/WM. Age-, sex-, race/ethnicity-, and study-adjusted odds ratios (ORs) and 95% confidence intervals (CIs) were estimated using logistic regression for a total of 374 LPL/WM cases and 23 096 controls.Results In multivariate analysis including all putative risk factors, LPL/WM risk was associated with history of Sjögren’s syndrome (OR = 14.0, 95% CI = 3.60 to 54.6), systemic lupus erythematosus (OR = 8.23, 95% CI = 2.69 to 25.2), hay fever (OR = 0.73, 95% CI = 0.54 to 0.99), positive hepatitis C serology (OR = 2.51, 95% CI = 1.03 to 6.17), hematologic malignancy in a first-degree relative (OR = 1.64, 95% CI = 1.02 to 2.64), adult weight (OR = 0.61, 95% CI = 0.44 to 0.85 for highest vs. lowest quartile), duration of cigarette smoking (OR = 1.46, 95% CI = 1.04 to 2.05 for ≥ 40 years vs. nonsmokers), and occupation as a medical doctor (OR = 5.54, 95% CI = 2.19 to 14.0). There was no association with other medical conditions, lifestyle factors, or occupations.Conclusions This pooled analysis confirmed associations with immune conditions and family history of hematologic malignancy, and identified new associations with hay fever, weight, smoking, and occupation, and no association with other lifestyle factors. These findings offer clues to LPL/WM biology and prevention.- Published
- 2014
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25. Medical History, Lifestyle, and Occupational Risk Factors for Hairy Cell Leukemia: The InterLymph Non-Hodgkin Lymphoma Subtypes Project
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Monnereau, Alain, Slager, Susan L., Hughes, Ann Maree, Smith, Alex, Glimelius, Bengt, Habermann, Thomas M., Berndt, Sonja I., Staines, Anthony, Norman, Aaron D., Cerhan, James R., Sampson, Joshua N., Morton, Lindsay M., and Clavel, Jacqueline
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Background Little is known about the etiology of hairy cell leukemia (HCL), a rare B-cell lymphoproliferative disorder with marked male predominance. Our aim was to identify key risk factors for HCL.Methods A pooled analysis of individual-level data for 154 histologically confirmed HCL cases and 8834 controls from five case–control studies, conducted in Europe and Australia, was undertaken. Age-, race and/or ethnicity-, sex-, and study-adjusted odds ratios (OR) and 95% confidence intervals (CI) were estimated using unconditional logistic regression.Results The usual patterns for age and sex in HCL were observed, with a median age of 55 years and sex ratio of 3.7 males to females. Cigarette smoking was inversely associated with HCL (OR = 0.51, 95% CI = 0.37 to 0.71) with dose–response relationships observed for duration, frequency, and lifetime cigarette smoking (Ptrend < .001). In contrast, occupation as a farmer was positively associated with HCL (OR = 2.34, 95% CI = 1.36 to 4.01), with a dose–response relationship observed for duration (OR = 1.82, 95% CI = 0.85 to 3.88 for ≤10 years vs never; and OR = 2.98, 95% CI = 1.50 to 5.93 for >10 years vs never; Ptrend = .025). Adult height was also positively associated with HCL (OR = 2.69, 95% CI = 1.39 to 5.29 for upper vs lower quartile of height). The observed associations remained consistent in multivariate analysis.Conclusions Our observations of an increased risk of HCL from farming exposures and decreased risk from smoking exposures, independent of one another, support a multifactorial origin and an etiological specificity of HCL compared with other non-Hodgkin lymphoma subtypes. The positive association with height is a novel finding that needs replication.- Published
- 2014
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26. Medical History, Lifestyle, Family History, and Occupational Risk Factors for Mycosis Fungoides and Sezary Syndrome: The InterLymph Non-Hodgkin Lymphoma Subtypes Project
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Aschebrook-Kilfoy, Briseis, Cocco, Pierluigi, La Vecchia, Carlo, Chang, Ellen T., Vajdic, Claire M., Kadin, Marshall E., Spinelli, John J., Morton, Lindsay M., Kane, Eleanor V., Sampson, Joshua N., Kasten, Carol, Feldman, Andrew L., Wang, Sophia S., and Zhang, Yawei
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Background Mycosis fungoides and Sézary syndrome (MF/SS) are rare cutaneous T-cell lymphomas. Their etiology is poorly understood.Methods A pooled analysis of 324 MF/SS cases and 17217 controls from 14 case–control studies from Europe, North America, and Australia, as part of the International Lymphoma Epidemiology Consortium (InterLymph) Non-Hodgkin Lymphoma (NHL) Subtypes Project, was carried out to investigate associations with lifestyle, medical history, family history, and occupational risk factors. Multivariate logistic regression models were used to calculate odds ratios (OR) and 95% confidence intervals (CI).Results We found an increased risk of MF/SS associated with body mass index equal to or larger than 30kg/m2 (OR = 1.57, 95% CI = 1.03 to 2.40), cigarette smoking for 40 years or more (OR = 1.55, 95% CI = 1.04 to 2.31), eczema (OR = 2.38, 95% CI = 1.73 to 3.29), family history of multiple myeloma (OR = 8.49, 95% CI = 3.31 to 21.80), and occupation as crop and vegetable farmers (OR = 2.37, 95% CI = 1.14 to 4.92), painters (OR = 3.71, 95% CI = 1.94 to 7.07), woodworkers (OR = 2.20, 95% CI = 1.18 to 4.08), and general carpenters (OR = 4.07, 95% CI = 1.54 to 10.75). We also found a reduced risk of MF/SS associated with moderate leisure time physical activity (OR = 0.46, 95% CI = 0.22 to 0.97).Conclusions Our study provided the first detailed analysis of risk factors for MF/SS and further investigation is needed to confirm these findings in prospective data and in other populations.- Published
- 2014
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27. Medical History, Lifestyle, Family History, and Occupational Risk Factors for Diffuse Large B-Cell Lymphoma: The InterLymph Non-Hodgkin Lymphoma Subtypes Project
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Cerhan, James R., Kricker, Anne, Paltiel, Ora, Flowers, Christopher R., Wang, Sophia S., Monnereau, Alain, Blair, Aaron, Maso, Luigino Dal, Kane, Eleanor V., Nieters, Alexandra, Foran, James M., Miligi, Lucia, Clavel, Jacqueline, Bernstein, Leslie, Rothman, Nathaniel, Slager, Susan L., Sampson, Joshua N., Morton, Lindsay M., and Skibola, Christine F.
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Background Although risk factors for diffuse large B-cell lymphoma (DLBCL) have been suggested, their independent effects, modification by sex, and association with anatomical sites are largely unknown.Methods In a pooled analysis of 4667 cases and 22639 controls from 19 studies, we used stepwise logistic regression to identify the most parsimonious multivariate models for DLBCL overall, by sex, and for selected anatomical sites.Results DLBCL was associated with B-cell activating autoimmune diseases (odds ratio [OR] = 2.36, 95% confidence interval [CI] = 1.80 to 3.09), hepatitis C virus seropositivity (OR = 2.02, 95% CI = 1.47 to 2.76), family history of non-Hodgkin lymphoma (OR = 1.95, 95% CI = 1.54 to 2.47), higher young adult body mass index (OR = 1.58, 95% CI = 1.12 to 2.23, for 35+ vs 18.5 to 22.4 kg/m2), higher recreational sun exposure (OR = 0.78, 95% CI = 0.69 to 0.89), any atopic disorder (OR = 0.82, 95% CI = 0.76 to 0.89), and higher socioeconomic status (OR = 0.86, 95% CI = 0.79 to 0.94). Additional risk factors for women were occupation as field crop/vegetable farm worker (OR = 1.78, 95% CI = 1.22 to 2.60), hairdresser (OR = 1.65, 95% CI = 1.12 to 2.41), and seamstress/embroider (OR = 1.49, 95% CI = 1.13 to 1.97), low adult body mass index (OR = 0.46, 95% CI = 0.29 to 0.74, for <18.5 vs 18.5 to 22.4 kg/m2), hormone replacement therapy started age at least 50 years (OR = 0.68, 95% CI = 0.52 to 0.88), and oral contraceptive use before 1970 (OR = 0.78, 95% CI = 0.62 to 1.00); and for men were occupation as material handling equipment operator (OR = 1.58, 95% CI = 1.02 to 2.44), lifetime alcohol consumption (OR = 0.57, 95% CI = 0.44 to 0.75, for >400kg vs nondrinker), and previous blood transfusion (OR = 0.69, 95% CI = 0.57 to 0.83). Autoimmune disease, atopy, and family history of non-Hodgkin lymphoma showed similar associations across selected anatomical sites, whereas smoking was associated with central nervous system, testicular and cutaneous DLBCLs; inflammatory bowel disease was associated with gastrointestinal DLBCL; and farming and hair dye use were associated with mediastinal DLBCL.Conclusion Our results support a complex and multifactorial etiology for DLBCL with some variation in risk observed by sex and anatomical site.- Published
- 2014
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28. Medical History, Lifestyle, Family History, and Occupational Risk Factors for Chronic Lymphocytic Leukemia/Small Lymphocytic Lymphoma: The InterLymph Non-Hodgkin Lymphoma Subtypes Project
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Slager, Susan L., Benavente, Yolanda, Blair, Aaron, Vermeulen, Roel, Cerhan, James R., Costantini, Adele Seniori, Monnereau, Alain, Nieters, Alexandra, Clavel, Jacqueline, Call, Timothy G., Maynadié, Marc, Lan, Qing, Clarke, Christina A., Lightfoot, Tracy, Norman, Aaron D., Sampson, Joshua N., Casabonne, Delphine, Cocco, Pierluigi, and de Sanjosé, Silvia
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Background Chronic lymphocytic leukemia (CLL) and small lymphocytic lymphoma (SLL) are two subtypes of non-Hodgkin lymphoma. A number of studies have evaluated associations between risk factors and CLL/SLL risk. However, these associations remain inconsistent or lacked confirmation. This may be due, in part, to the inadequate sample size of CLL/SLL cases.Methods We performed a pooled analysis of 2440 CLL/SLL cases and 15186 controls from 13 case-control studies from Europe, North America, and Australia. We evaluated associations of medical history, family history, lifestyle, and occupational risk factors with CLL/SLL risk. Multivariate logistic regression analyses were used to estimate odds ratios (ORs) and 95% confidence intervals (CIs).Results We confirmed prior inverse associations with any atopic condition and recreational sun exposure. We also confirmed prior elevated associations with usual adult height, hepatitis C virus seropositivity, living or working on a farm, and family history of any hematological malignancy. Novel associations were identified with hairdresser occupation (OR = 1.77, 95% CI = 1.05 to 2.98) and blood transfusion history (OR = 0.79, 95% CI = 0.66 to 0.94). We also found smoking to have modest protective effect (OR = 0.9, 95% CI = 0.81 to 0.99). All exposures showed evidence of independent effects.Conclusions We have identified or confirmed several independent risk factors for CLL/SLL supporting a role for genetics (through family history), immune function (through allergy and sun), infection (through hepatitis C virus), and height, and other pathways of immune response. Given that CLL/SLL has more than 30 susceptibility loci identified to date, studies evaluating the interaction among genetic and nongenetic factors are warranted.- Published
- 2014
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29. Etiologic Heterogeneity Among Non-Hodgkin Lymphoma Subtypes: The InterLymph Non-Hodgkin Lymphoma Subtypes Project
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Morton, Lindsay M., Slager, Susan L., Cerhan, James R., Wang, Sophia S., Vajdic, Claire M., Skibola, Christine F., Bracci, Paige M., de Sanjosé, Silvia, Smedby, Karin E., Chiu, Brian C. H., Zhang, Yawei, Mbulaiteye, Sam M., Monnereau, Alain, Turner, Jennifer J., Clavel, Jacqueline, Adami, Hans-Olov, Chang, Ellen T., Glimelius, Bengt, Hjalgrim, Henrik, Melbye, Mads, Crosignani, Paolo, di Lollo, Simonetta, Miligi, Lucia, Nanni, Oriana, Ramazzotti, Valerio, Rodella, Stefania, Costantini, Adele Seniori, Stagnaro, Emanuele, Tumino, Rosario, Vindigni, Carla, Vineis, Paolo, Becker, Nikolaus, Benavente, Yolanda, Boffetta, Paolo, Brennan, Paul, Cocco, Pierluigi, Foretova, Lenka, Maynadié, Marc, Nieters, Alexandra, Staines, Anthony, Colt, Joanne S., Cozen, Wendy, Davis, Scott, de Roos, Anneclaire J., Hartge, Patricia, Rothman, Nathaniel, Severson, Richard K., Holly, Elizabeth A., Call, Timothy G., Feldman, Andrew L., Habermann, Thomas M., Liebow, Mark, Blair, Aaron, Cantor, Kenneth P., Kane, Eleanor V., Lightfoot, Tracy, Roman, Eve, Smith, Alex, Brooks-Wilson, Angela, Connors, Joseph M., Gascoyne, Randy D., Spinelli, John J., Armstrong, Bruce K., Kricker, Anne, Holford, Theodore R., Lan, Qing, Zheng, Tongzhang, Orsi, Laurent, Dal Maso, Luigino, Franceschi, Silvia, La Vecchia, Carlo, Negri, Eva, Serraino, Diego, Bernstein, Leslie, Levine, Alexandra, Friedberg, Jonathan W., Kelly, Jennifer L., Berndt, Sonja I., Birmann, Brenda M., Clarke, Christina A., Flowers, Christopher R., Foran, James M., Kadin, Marshall E., Paltiel, Ora, Weisenburger, Dennis D., Linet, Martha S., and Sampson, Joshua N.
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Background Non-Hodgkin lymphoma (NHL) comprises biologically and clinically heterogeneous subtypes. Previously, study size has limited the ability to compare and contrast the risk factor profiles among these heterogeneous subtypes.Methods We pooled individual-level data from 17 471 NHL cases and 23 096 controls in 20 case–control studies from the International Lymphoma Epidemiology Consortium (InterLymph). We estimated the associations, measured as odds ratios, between each of 11 NHL subtypes and self-reported medical history, family history of hematologic malignancy, lifestyle factors, and occupation. We then assessed the heterogeneity of associations by evaluating the variability (Q value) of the estimated odds ratios for a given exposure among subtypes. Finally, we organized the subtypes into a hierarchical tree to identify groups that had similar risk factor profiles. Statistical significance of tree partitions was estimated by permutation-based P values (PNODE ).Results Risks differed statistically significantly among NHL subtypes for medical history factors (autoimmune diseases, hepatitis C virus seropositivity, eczema, and blood transfusion), family history of leukemia and multiple myeloma, alcohol consumption, cigarette smoking, and certain occupations, whereas generally homogeneous risks among subtypes were observed for family history of NHL, recreational sun exposure, hay fever, allergy, and socioeconomic status. Overall, the greatest difference in risk factors occurred between T-cell and B-cell lymphomas (PNODE < 1.0×10−4), with increased risks generally restricted to T-cell lymphomas for eczema, T-cell-activating autoimmune diseases, family history of multiple myeloma, and occupation as a painter. We further observed substantial heterogeneity among B-cell lymphomas (PNODE < 1.0×10−4). Increased risks for B-cell-activating autoimmune disease and hepatitis C virus seropositivity and decreased risks for alcohol consumption and occupation as a teacher generally were restricted to marginal zone lymphoma, Burkitt/Burkitt-like lymphoma/leukemia, diffuse large B-cell lymphoma, and/or lymphoplasmacytic lymphoma/Waldenström macroglobulinemia.Conclusions Using a novel approach to investigate etiologic heterogeneity among NHL subtypes, we identified risk factors that were common among subtypes as well as risk factors that appeared to be distinct among individual or a few subtypes, suggesting both subtype-specific and shared underlying mechanisms. Further research is needed to test putative mechanisms, investigate other risk factors (eg, other infections, environmental exposures, and diet), and evaluate potential joint effects with genetic susceptibility.- Published
- 2014
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30. Medical History, Lifestyle, Family History, and Occupational Risk Factors for Sporadic Burkitt Lymphoma/Leukemia: The Interlymph Non-Hodgkin Lymphoma Subtypes Project
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Mbulaiteye, Sam M., Morton, Lindsay M., Sampson, Joshua N., Chang, Ellen T., Costas, Laura, de Sanjosé, Silvia, Lightfoot, Tracy, Kelly, Jennifer, Friedberg, Jonathan W., Cozen, Wendy, Marcos-Gragera, Rafael, Slager, Susan L., Birmann, Brenda M., and Weisenburger, Dennis D.
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Background The etiologic role of medical history, lifestyle, family history, and occupational risk factors in sporadic Burkitt lymphoma (BL) is unknown, but epidemiologic and clinical evidence suggests that risk factors may vary by age.Methods We investigated risk factors for sporadic BL in 295 cases compared with 21818 controls in a pooled analysis of 18 case–control studies in the International Lymphoma Epidemiology Consortium (InterLymph). Cases were defined to include typical BL or Burkitt-like lymphoma. Odds ratios (ORs) and 95% confidence intervals (CIs) for associations were calculated separately for younger (<50 years) and older (≥50 years) BL using multivariate logistic regression.Results Cases included 133 younger BL and 159 older BL (age was missing for three cases) and they were evenly split between typical BL (n = 147) and Burkitt-like lymphoma (n = 148). BL in younger participants was inversely associated with a history of allergy (OR = 0.58; 95% CI = 0.32 to 1.05), and positively associated with a history of eczema among individuals without other atopic conditions (OR = 2.54; 95% CI = 1.20 to 5.40), taller height (OR = 2.17; 95% CI = 1.08 to 4.36), and employment as a cleaner (OR = 3.49; 95% CI = 1.13 to 10.7). BL in older participants was associated with a history of hepatitis C virus seropositivity (OR = 4.19; 95% CI = 1.05 to 16.6) based on three exposed cases. Regardless of age, BL was inversely associated with alcohol consumption and positively associated with height.Conclusions Our data suggest that BL in younger and older adults may be etiologically distinct.- Published
- 2014
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31. A Note on the Effect on Power of Score Tests via Dimension Reduction by Penalized Regression under the Null
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Martinez, Josue G., Carroll, Raymond J, Muller, Samuel, Sampson, Joshua N., and Chatterjee, Nilanjan
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We consider the problem of score testing for certain low dimensional parameters of interest in a model that could include finite but high dimensional secondary covariates and associated nuisance parameters. We investigate the possibility of the potential gain in power by reducing the dimensionality of the secondary variables via oracle estimators such as the Adaptive Lasso. As an application, we use a recently developed framework for score tests of association of a disease outcome with an exposure of interest in the presence of a possible interaction of the exposure with other co-factors of the model. We derive the local power of such tests and show that if the primary and secondary predictors are independent, then having an oracle estimator does not improve the local power of the score test. Conversely, if they are dependent, there is the potential for power gain. Simulations are used to validate the theoretical results and explore the extent of correlation needed between the primary and secondary covariates to observe an improvement of the power of the test by using the oracle estimator. Our conclusions are likely to hold more generally beyond the model of interactions considered here.
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- 2010
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32. ChemInform Abstract: Ring-Closing Metathesis of Olefinic Peptides: Design, Synthesis, and Structural Characterization of Macrocyclic Helical Peptides.
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Blackwell, Helen E., Sadowsky, Jack D., Howard, Rebecca J., Sampson, Joshua N., Chao, Jeffery A., Steinmetz, Wayne E., O'Leary, Daniel J., and Grubbs, Robert H.
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ChemInform is a weekly Abstracting Service, delivering concise information at a glance that was extracted from about 100 leading journals. To access a ChemInform Abstract of an article which was published elsewhere, please select a “Full Text” option. The original article is trackable via the “References” option.
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- 2001
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