Lawal, R. A., Wragg, D., Silva, P., Vanmechelen, K., Vereijken, A., Wu, D. D., Al-Atiyat, R. M., and Hanotte, O.
The evolutionary history of domestic chicken has been subjected to debate since Charles Darwin first proposed the red junglefowl Gallus gallus sppas its sole ancestor. However, molecular evidence of introgression from the gray junglefowl G. sonneratiiin the form of the yellow skin locus (Eriksson et al., 2008) and success in producing fertile offspring from Gallus spphybrids (Danforth,1958; Morejohn, 1968) has challenged the single species origin for the domestic chicken. In this project, we analyzed the full genomes of 50 birds, including: 4 junglefowl species, indigenous chickens from Ethiopia, Sri Lanka, and Saudi Arabia, as well as European fancy chicken for evidence of introgression from G. sonneratii, G. lafayetii, and/or G. varius. Using the pooled heterozygosity (Rubin et al., 2010), ABBA-BABA (Martin et al., 2013) and Fst(Weir and Cockerham, 1984) statistics, we identified several candidate regions of introgression from G. sonneratiiand G. lafayetiiinto domestic chicken and vice versa. These regions represent new genomic landmarks of the selection pressures that have shaped the genome of domestic chicken and may provide us with new insights on the history of the geographical dispersion of domestic chicken populations.