114 results on '"Bucher, Philipp"'
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2. A unified and modular coupling of particle methods with fem for civil engineering problems
3. High-fidelity aeroelastic analyses of wind turbines in complex terrain: fluid–structure interaction and aerodynamic modeling
4. The Breast Cancer Epigenomics Track Hub
5. High-fidelity aeroelastic analyses of wind turbines in complex terrain: FSI and aerodynamic modelling
6. The gene regulation knowledge commons: the action area of GREEKC
7. Computational identification and experimental characterization of preferred downstream positions in human core promoters
8. Non-conforming FEM-FEM coupling approaches and their application to dynamic structural analysis
9. Advanced Modeling and Simulation of Rockfall Attenuator Barriers Via Partitioned DEM-FEM Coupling
10. Contraceptive progestins with androgenic properties stimulate breast epithelial cell proliferation
11. Phylogenetic Analysis of Cell Types Using Histone Modifications
12. Computational identification and experimental characterization of preferred downstream positions in human core promoters
13. Methods for Discovery and Characterization of DNA Sequence Motifs
14. Partitioned Strong Coupling of Discrete Elements with Large Deformation Structural Finite Elements to Model Impact on Highly Flexible Tension Structures
15. Insights gained from a comprehensive all-against-all transcription factor binding motif benchmarking study
16. The secreted protease Adamts18 links hormone action to activation of the mammary stem cell niche
17. Computational Biology
18. Optimizing Generalized Profiles for Enhanced Discrimination of Biomolecular Sequences
19. Common genetic variants associated with Parkinson’s disease display widespread signature of epigenetic plasticity
20. EPD in 2020: enhanced data visualization and extension to ncRNA promoters
21. Opposing chromatin remodelers control transcription initiation frequency and start site selection
22. SPar-K: a method to partition NGS signal data
23. Opposing chromatin remodelers control transcription initiation frequency and start site selection
24. Short-lived AUF1 p42-binding mRNAs of RANKL and BCL6 have two distinct instability elements each
25. Detection and benchmarking of somatic mutations in cancer genomes using RNA-seq data
26. PWMScan: a fast tool for scanning entire genomes with a position-specific weight matrix
27. Detection and benchmarking of somatic mutations in cancer genomes using RNA-seq data
28. MGA repository: a curated data resource for ChIP-seq and other genome annotated data
29. SMiLE-seq: Selective Microfluidics-based Ligand Enrichment followed by sequencing
30. SMiLE-seq identifies binding motifs of single and dimeric transcription factors
31. The eukaryotic promoter database in its 30th year: focus on non-vertebrate organisms
32. SNP2TFBS – a database of regulatory SNPs affecting predicted transcription factor binding site affinity
33. The ChIP-Seq tools and web server: a resource for analyzing ChIP-seq and other types of genomic data
34. Influence of Rotational Nucleosome Positioning on Transcription Start Site Selection in Animal Promoters
35. Influence of rotational nucleosome positioning on transcription start site selection in animals promoters
36. Predicting transcription factor site occupancy using DNA sequence intrinsic and cell-type specific chromatin features
37. A maximum-likelihood approach for building cell-type trees by lifting
38. Principles of ChIP-seq Data Analysis Illustrated with Examples
39. The Eukaryotic Promoter Database: expansion of EPDnew and new promoter analysis tools
40. Study of cell differentiation by phylogenetic analysis using histone modification data
41. Classification of selectively constrained DNA elements using feature vectors and rule-based classifiers
42. Probabilistic partitioning methods to find significant patterns in ChIP-Seq data
43. Fifteen years SIB Swiss Institute of Bioinformatics: life science databases, tools and support
44. Nuclear Factor I genomic binding associates with chromatin boundaries
45. UCNEbase—a database of ultraconserved non-coding elements and genomic regulatory blocks
46. EPD and EPDnew, high-quality promoter resources in the next-generation sequencing era
47. Genomic context analysis reveals dense interaction network between vertebrate ultraconserved non-coding elements
48. ChIPnorm: A Statistical Method for Normalizing and Identifying Differential Regions in Histone Modification ChIP-seq Libraries
49. PRACTICALITY AND TIME COMPLEXITY OF A SPARSIFIED RNA FOLDING ALGORITHM
50. RNA Profiling and Chromatin Immunoprecipitation-Sequencing Reveal that PTF1a Stabilizes Pancreas Progenitor Identity via the Control of MNX1/HLXB9 and a Network of Other Transcription Factors
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