56 results on '"Peng, Zhenling"'
Search Results
2. Q-BioLiP: A Comprehensive Resource for Quaternary Structure-based Protein–ligand Interactions
3. Abiotic Conditions Drive Denitrification While Abundances and Resource-Driven Ecological Clusters Control Nitrification in Cropland Soils
4. Key decomposers of straw depending on tillage and fertilization
5. trRosettaRNA: automated prediction of RNA 3D structure with transformer network
6. Maize, wheat, and soybean root traits depend upon soil phosphorus fertility and mycorrhizal status
7. Improved protein structure prediction with trRosettaX2, AlphaFold2, and optimized MSAs in CASP15
8. Disordered RNA-Binding Region Prediction with DisoRDPbind
9. Q-BioLiP: A Comprehensive Resource for Quaternary Structure-based Protein–ligand Interactions
10. Responses of arbuscular mycorrhizal fungi to straw return and nitrogen fertilizer reduction in a rainfed maize field
11. A unified approach to protein domain parsing with inter-residue distance matrix
12. Single-sequence protein structure prediction using supervised transformer protein language models
13. CLIP: accurate prediction of disordered linear interacting peptides from protein sequences using co-evolutionary information
14. Accuratede novoprediction of RNA 3D structure with transformer network
15. Prediction of Disordered RNA, DNA, and Protein Binding Regions Using DisoRDPbind
16. Grazing exclusion had greater effects than nitrogen addition on soil and plant community in a desert steppe, Northwest of China
17. Single-sequence protein structure prediction using supervised transformer protein language models
18. Toward the assessment of predicted inter-residue distance
19. The trRosetta server for fast and accurate protein structure prediction
20. Improved Protein Structure Prediction Using a New Multi‐Scale Network and Homologous Templates
21. Accurate Sequence-Based Prediction of Deleterious nsSNPs with Multiple Sequence Profiles and Putative Binding Residues
22. Improved estimation of model quality using predicted inter-residue distance
23. Recognition of small molecule–RNA binding sites using RNA sequence and structure
24. RNA inter-nucleotide 3D closeness prediction by deep residual neural networks
25. Improved protein structure prediction using predicted interresidue orientations
26. On monomeric and multimeric structures-based protein-ligand interactions
27. CATHER: a novel threading algorithm with predicted contacts
28. Improved protein structure prediction using predicted inter-residue orientations
29. Protein contact prediction using metagenome sequence data and residual neural networks
30. Codon selection reduces GC content bias in nucleic acids encoding for intrinsically disordered proteins
31. Endoplasmic reticulum and the microRNA environment in the cardiovascular system
32. Effect of arbuscular mycorrhizal fungi on soil enzyme activity is coupled with increased plant biomass
33. Computational Prediction of MoRFs, Short Disorder-to-order Transitioning Protein Binding Regions
34. Enhanced prediction of RNA solvent accessibility with long short-term memory neural networks and improved sequence profiles
35. Improving the prediction of protein–nucleic acids binding residues via multiple sequence profiles and the consensus of complementary methods
36. Improving Sequence-Based Prediction of Protein–Peptide Binding Residues by Introducing Intrinsic Disorder and a Consensus Method
37. COACH-D: improved protein–ligand binding sites prediction with refined ligand-binding poses through molecular docking
38. mTM-align: a server for fast protein structure database search and multiple protein structure alignment
39. CoABind: a novel algorithm for Coenzyme A (CoA)- and CoA derivatives-binding residues prediction
40. mTM-align: an algorithm for fast and accurate multiple protein structure alignment
41. An ensemble approach to protein fold classification by integration of template-based assignment and support vector machine classifier
42. A large-scale comparative assessment of methods for residue–residue contact prediction
43. Genes encoding intrinsic disorder in Eukaryota have high GC content
44. In various protein complexes, disordered protomers have large per-residue surface areas and area of protein-, DNA- and RNA-binding interfaces
45. High-throughput prediction of RNA, DNA and protein binding regions mediated by intrinsic disorder
46. Genome-wide analysis of thapsigargin-induced microRNAs and their targets in NIH3T3 cells
47. Exceptionally abundant exceptions: comprehensive characterization of intrinsic disorder in all domains of life
48. Interplay Between the Oxidoreductase PDIA6 and microRNA-322 Controls the Response to Disrupted Endoplasmic Reticulum Calcium Homeostasis
49. Intrinsic Disorder in the BK Channel and Its Interactome
50. On the intrinsic disorder status of the major players in programmed cell death pathways
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