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5 results on '"Calevro, Federica"'

1. Correction to: The genome sequence of the grape phylloxera provides insights into the evolution, adaptation, and invasion routes of an iconic pest

Author

Rispe, Claude, Legeai, Fabrice, Nabity, Paul D, Fernández, Rosa, Arora, Arinder K, Baa-Puyoulet, Patrice, Banfill, Celeste R, Bao, Leticia, Barberà, Miquel, Bouallègue, Maryem, Bretaudeau, Anthony, Brisson, Jennifer A, Calevro, Federica, Capy, Pierre, Catrice, Olivier, Chertemps, Thomas, Couture, Carole, Delière, Laurent, Douglas, Angela E, Dufault-Thompson, Keith, Escuer, Paula, Feng, Honglin, Forneck, Astrid, Gabaldón, Toni, Guigó, Roderic, Hilliou, Frédérique, Hinojosa-Alvarez, Silvia, Hsiao, Yi-min, Hudaverdian, Sylvie, Jacquin-Joly, Emmanuelle, James, Edward B, Johnston, Spencer, Joubard, Benjamin, Le Goff, Gaëlle, Le Trionnaire, Gaël, Librado, Pablo, Liu, Shanlin, Lombaert, Eric, Lu, Hsiao-ling, Maïbèche, Martine, Makni, Mohamed, Marcet-Houben, Marina, Martínez-Torres, David, Meslin, Camille, Montagné, Nicolas, Moran, Nancy A, Papura, Daciana, Parisot, Nicolas, Rahbé, Yvan, Lopes, Mélanie Ribeiro, Ripoll-Cladellas, Aida, Robin, Stéphanie, Roques, Céline, Roux, Pascale, Rozas, Julio, Sánchez-Gracia, Alejandro, Sánchez-Herrero, Jose F, Santesmasses, Didac, Scatoni, Iris, Serre, Rémy-Félix, Tang, Ming, Tian, Wenhua, Umina, Paul A, van Munster, Manuella, Vincent-Monégat, Carole, Wemmer, Joshua, Wilson, Alex CC, Zhang, Ying, Zhao, Chaoyang, Zhao, Jing, Zhao, Serena, Zhou, Xin, Delmotte, François, and Tagu, Denis

Subjects
Developmental Biology
Abstract

An amendment to this paper has been published and can be accessed via the original article.

Published
2020

2. The genome sequence of the grape phylloxera provides insights into the evolution, adaptation, and invasion routes of an iconic pest

Author

Rispe, Claude, Legeai, Fabrice, Nabity, Paul D, Fernández, Rosa, Arora, Arinder K, Baa-Puyoulet, Patrice, Banfill, Celeste R, Bao, Leticia, Barberà, Miquel, Bouallègue, Maryem, Bretaudeau, Anthony, Brisson, Jennifer A, Calevro, Federica, Capy, Pierre, Catrice, Olivier, Chertemps, Thomas, Couture, Carole, Delière, Laurent, Douglas, Angela E, Dufault-Thompson, Keith, Escuer, Paula, Feng, Honglin, Forneck, Astrid, Gabaldón, Toni, Guigó, Roderic, Hilliou, Frédérique, Hinojosa-Alvarez, Silvia, Hsiao, Yi-min, Hudaverdian, Sylvie, Jacquin-Joly, Emmanuelle, James, Edward B, Johnston, Spencer, Joubard, Benjamin, Le Goff, Gaëlle, Le Trionnaire, Gaël, Librado, Pablo, Liu, Shanlin, Lombaert, Eric, Lu, Hsiao-ling, Maïbèche, Martine, Makni, Mohamed, Marcet-Houben, Marina, Martínez-Torres, David, Meslin, Camille, Montagné, Nicolas, Moran, Nancy A, Papura, Daciana, Parisot, Nicolas, Rahbé, Yvan, Lopes, Mélanie Ribeiro, Ripoll-Cladellas, Aida, Robin, Stéphanie, Roques, Céline, Roux, Pascale, Rozas, Julio, Sánchez-Gracia, Alejandro, Sánchez-Herrero, Jose F, Santesmasses, Didac, Scatoni, Iris, Serre, Rémy-Félix, Tang, Ming, Tian, Wenhua, Umina, Paul A, van Munster, Manuella, Vincent-Monégat, Carole, Wemmer, Joshua, Wilson, Alex CC, Zhang, Ying, Zhao, Chaoyang, Zhao, Jing, Zhao, Serena, Zhou, Xin, Delmotte, François, and Tagu, Denis

Subjects
Biological Sciences, Genetics, Human Genome, Infection, Climate Action, Adaptation, Biological, Animal Distribution, Animals, Biological Evolution, Genome, Insect, Hemiptera, Introduced Species, Vitis, Arthropod genomes, Daktulosphaira vitifoliae, Gene duplications, Host plant interactions, Effectors, Biological invasions, Developmental Biology, Biological sciences
Abstract

BackgroundAlthough native to North America, the invasion of the aphid-like grape phylloxera Daktulosphaira vitifoliae across the globe altered the course of grape cultivation. For the past 150 years, viticulture relied on grafting-resistant North American Vitis species as rootstocks, thereby limiting genetic stocks tolerant to other stressors such as pathogens and climate change. Limited understanding of the insect genetics resulted in successive outbreaks across the globe when rootstocks failed. Here we report the 294-Mb genome of D. vitifoliae as a basic tool to understand host plant manipulation, nutritional endosymbiosis, and enhance global viticulture.ResultsUsing a combination of genome, RNA, and population resequencing, we found grape phylloxera showed high duplication rates since its common ancestor with aphids, but similarity in most metabolic genes, despite lacking obligate nutritional symbioses and feeding from parenchyma. Similarly, no enrichment occurred in development genes in relation to viviparity. However, phylloxera evolved > 2700 unique genes that resemble putative effectors and are active during feeding. Population sequencing revealed the global invasion began from the upper Mississippi River in North America, spread to Europe and from there to the rest of the world.ConclusionsThe grape phylloxera genome reveals genetic architecture relative to the evolution of nutritional endosymbiosis, viviparity, and herbivory. The extraordinary expansion in effector genes also suggests novel adaptations to plant feeding and how insects induce complex plant phenotypes, for instance galls. Finally, our understanding of the origin of this invasive species and its genome provide genetics resources to alleviate rootstock bottlenecks restricting the advancement of viticulture.

Published
2020

3. Correction to: The genome sequence of the grape phylloxera provides insights into the evolution, adaptation, and invasion routes of an iconic pest.

Author

Rispe, Claude, Legeai, Fabrice, Nabity, Paul D, Fernández, Rosa, Arora, Arinder K, Baa-Puyoulet, Patrice, Banfill, Celeste R, Bao, Leticia, Barberà, Miquel, Bouallègue, Maryem, Bretaudeau, Anthony, Brisson, Jennifer A, Calevro, Federica, Capy, Pierre, Catrice, Olivier, Chertemps, Thomas, Couture, Carole, Delière, Laurent, Douglas, Angela E, Dufault-Thompson, Keith, Escuer, Paula, Feng, Honglin, Forneck, Astrid, Gabaldón, Toni, Guigó, Roderic, Hilliou, Frédérique, Hinojosa-Alvarez, Silvia, Hsiao, Yi-Min, Hudaverdian, Sylvie, Jacquin-Joly, Emmanuelle, James, Edward B, Johnston, Spencer, Joubard, Benjamin, Le Goff, Gaëlle, Le Trionnaire, Gaël, Librado, Pablo, Liu, Shanlin, Lombaert, Eric, Lu, Hsiao-Ling, Maïbèche, Martine, Makni, Mohamed, Marcet-Houben, Marina, Martínez-Torres, David, Meslin, Camille, Montagné, Nicolas, Moran, Nancy A, Papura, Daciana, Parisot, Nicolas, Rahbé, Yvan, Lopes, Mélanie Ribeiro, Ripoll-Cladellas, Aida, Robin, Stéphanie, Roques, Céline, Roux, Pascale, Rozas, Julio, Sánchez-Gracia, Alejandro, Sánchez-Herrero, Jose F, Santesmasses, Didac, Scatoni, Iris, Serre, Rémy-Félix, Tang, Ming, Tian, Wenhua, Umina, Paul A, van Munster, Manuella, Vincent-Monégat, Carole, Wemmer, Joshua, Wilson, Alex CC, Zhang, Ying, Zhao, Chaoyang, Zhao, Jing, Zhao, Serena, Zhou, Xin, Delmotte, François, and Tagu, Denis

Subjects
Developmental Biology, Biological Sciences
Abstract

An amendment to this paper has been published and can be accessed via the original article.

Published
2020

4. The genome sequence of the grape phylloxera provides insights into the evolution, adaptation, and invasion routes of an iconic pest.

Author

Rispe, Claude, Legeai, Fabrice, Nabity, Paul D, Fernández, Rosa, Arora, Arinder K, Baa-Puyoulet, Patrice, Banfill, Celeste R, Bao, Leticia, Barberà, Miquel, Bouallègue, Maryem, Bretaudeau, Anthony, Brisson, Jennifer A, Calevro, Federica, Capy, Pierre, Catrice, Olivier, Chertemps, Thomas, Couture, Carole, Delière, Laurent, Douglas, Angela E, Dufault-Thompson, Keith, Escuer, Paula, Feng, Honglin, Forneck, Astrid, Gabaldón, Toni, Guigó, Roderic, Hilliou, Frédérique, Hinojosa-Alvarez, Silvia, Hsiao, Yi-Min, Hudaverdian, Sylvie, Jacquin-Joly, Emmanuelle, James, Edward B, Johnston, Spencer, Joubard, Benjamin, Le Goff, Gaëlle, Le Trionnaire, Gaël, Librado, Pablo, Liu, Shanlin, Lombaert, Eric, Lu, Hsiao-Ling, Maïbèche, Martine, Makni, Mohamed, Marcet-Houben, Marina, Martínez-Torres, David, Meslin, Camille, Montagné, Nicolas, Moran, Nancy A, Papura, Daciana, Parisot, Nicolas, Rahbé, Yvan, Lopes, Mélanie Ribeiro, Ripoll-Cladellas, Aida, Robin, Stéphanie, Roques, Céline, Roux, Pascale, Rozas, Julio, Sánchez-Gracia, Alejandro, Sánchez-Herrero, Jose F, Santesmasses, Didac, Scatoni, Iris, Serre, Rémy-Félix, Tang, Ming, Tian, Wenhua, Umina, Paul A, van Munster, Manuella, Vincent-Monégat, Carole, Wemmer, Joshua, Wilson, Alex CC, Zhang, Ying, Zhao, Chaoyang, Zhao, Jing, Zhao, Serena, Zhou, Xin, Delmotte, François, and Tagu, Denis

Subjects
Arthropod genomes, Biological invasions, Daktulosphaira vitifoliae, Effectors, Gene duplications, Host plant interactions, Developmental Biology, Biological Sciences
Abstract

BackgroundAlthough native to North America, the invasion of the aphid-like grape phylloxera Daktulosphaira vitifoliae across the globe altered the course of grape cultivation. For the past 150 years, viticulture relied on grafting-resistant North American Vitis species as rootstocks, thereby limiting genetic stocks tolerant to other stressors such as pathogens and climate change. Limited understanding of the insect genetics resulted in successive outbreaks across the globe when rootstocks failed. Here we report the 294-Mb genome of D. vitifoliae as a basic tool to understand host plant manipulation, nutritional endosymbiosis, and enhance global viticulture.ResultsUsing a combination of genome, RNA, and population resequencing, we found grape phylloxera showed high duplication rates since its common ancestor with aphids, but similarity in most metabolic genes, despite lacking obligate nutritional symbioses and feeding from parenchyma. Similarly, no enrichment occurred in development genes in relation to viviparity. However, phylloxera evolved > 2700 unique genes that resemble putative effectors and are active during feeding. Population sequencing revealed the global invasion began from the upper Mississippi River in North America, spread to Europe and from there to the rest of the world.ConclusionsThe grape phylloxera genome reveals genetic architecture relative to the evolution of nutritional endosymbiosis, viviparity, and herbivory. The extraordinary expansion in effector genes also suggests novel adaptations to plant feeding and how insects induce complex plant phenotypes, for instance galls. Finally, our understanding of the origin of this invasive species and its genome provide genetics resources to alleviate rootstock bottlenecks restricting the advancement of viticulture.

Published
2020

5. Sawfly genomes reveal evolutionary acquisitions that fostered the mega-radiation of parasitoid and eusocial Hymenoptera

Author

Oeyen, Jan Philip, Baa-Puyoulet, Patrice, Benoit, Joshua B, Beukeboom, Leo W, Bornberg-Bauer, Erich, Buttstedt, Anja, Calevro, Federica, Cash, Elizabeth I, Chao, Hsu, Charles, Hubert, Chen, Mei-Ju May, Childers, Christopher, Cridge, Andrew G, Dearden, Peter, Dinh, Huyen, Doddapaneni, Harsha Vardhan, Dolan, Amanda, Donath, Alexander, Dowling, Daniel, Dugan, Shannon, Duncan, Elizabeth, Elpidina, Elena N, Friedrich, Markus, Geuverink, Elzemiek, Gibson, Joshua D, Grath, Sonja, Grimmelikhuijzen, Cornelis JP, Große-Wilde, Ewald, Gudobba, Cameron, Han, Yi, Hansson, Bill S, Hauser, Frank, Hughes, Daniel ST, Ioannidis, Panagiotis, Jacquin-Joly, Emmanuelle, Jennings, Emily C, Jones, Jeffery W, Klasberg, Steffen, Lee, Sandra L, Lesný, Peter, Lovegrove, Mackenzie, Martin, Sebastian, Martynov, Alexander G, Mayer, Christoph, Montagné, Nicolas, Moris, Victoria C, Munoz-Torres, Monica, Murali, Shwetha Canchi, Muzny, Donna M, Oppert, Brenda, Parisot, Nicolas, Pauli, Thomas, Peters, Ralph S, Petersen, Malte, Pick, Christian, Persyn, Emma, Podsiadlowski, Lars, Poelchau, Monica F, Provataris, Panagiotis, Qu, Jiaxin, Reijnders, Maarten JMF, von Reumont, Björn Marcus, Rosendale, Andrew J, Simao, Felipe A, Skelly, John, Sotiropoulos, Alexandros G, Stahl, Aaron L, Sumitani, Megumi, Szuter, Elise M, Tidswell, Olivia, Tsitlakidis, Evangelos, Vedder, Lucia, Waterhouse, Robert M, Werren, John H, Wilbrandt, Jeanne, Worley, Kim C, Yamamoto, Daisuke S, van de Zande, Louis, Zdobnov, Evgeny M, Ziesmann, Tanja, Gibbs, Richard A, Richards, Stephen, Hatakeyama, Masatsugu, Misof, Bernhard, and Niehuis, Oliver

Subjects
Human Genome, Genetics, Life Below Water, Amino Acid Sequence, Animals, Conserved Sequence, DNA Transposable Elements, Female, Gene Dosage, Genetic Speciation, Genome, Insect, Glycoproteins, Herbivory, Host-Parasite Interactions, Hymenoptera, Immunity, Insect Proteins, Male, Multigene Family, Receptors, Odorant, Social Behavior, Vision, Ocular, hexamerin, major royal jelly protein, microsynteny, odorant receptor, opsin, phytophagy, Biochemistry and Cell Biology, Evolutionary Biology, Developmental Biology
Abstract

The tremendous diversity of Hymenoptera is commonly attributed to the evolution of parasitoidism in the last common ancestor of parasitoid sawflies (Orussidae) and wasp-waisted Hymenoptera (Apocrita). However, Apocrita and Orussidae differ dramatically in their species richness, indicating that the diversification of Apocrita was promoted by additional traits. These traits have remained elusive due to a paucity of sawfly genome sequences, in particular those of parasitoid sawflies. Here, we present comparative analyses of draft genomes of the primarily phytophagous sawfly Athalia rosae and the parasitoid sawfly Orussus abietinus. Our analyses revealed that the ancestral hymenopteran genome exhibited traits that were previously considered unique to eusocial Apocrita (e.g., low transposable element content and activity) and a wider gene repertoire than previously thought (e.g., genes for CO2 detection). Moreover, we discovered that Apocrita evolved a significantly larger array of odorant receptors than sawflies, which could be relevant to the remarkable diversification of Apocrita by enabling efficient detection and reliable identification of hosts.

Published
2020

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