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5 results on '"Larimer F"'

1. Complete Genome Sequence of Alkaliphilus metalliredigens Strain QYMF, an Alkaliphilic and Metal-Reducing Bacterium Isolated from Borax-Contaminated Leachate Ponds

Author

Hwang, C, Copeland, A, Lucas, S, Lapidus, A, Barry, K, Detter, JC, del Rio, T Glavina, Hammon, N, Israni, S, Dalin, E, Tice, H, Pitluck, S, Chertkov, O, Brettin, T, Bruce, D, Han, C, Schmutz, J, Larimer, F, Land, ML, Hauser, L, Kyrpides, N, Mikhailova, N, Ye, Q, Zhou, J, Richardson, P, and Fields, MW

Subjects
Microbiology, Biological Sciences, Genetics, Human Genome
Abstract

Alkaliphilus metalliredigens strain QYMF is an anaerobic, alkaliphilic, and metal-reducing bacterium associated with phylum Firmicutes QYMF was isolated from alkaline borax leachate ponds. The genome sequence will help elucidate the role of metal-reducing microorganisms under alkaline environments, a capability that is not commonly observed in metal respiring-microorganisms.

Published
2016

2. Complete Genome Sequence of Alkaliphilus metalliredigens Strain QYMF, an Alkaliphilic and Metal-Reducing Bacterium Isolated from Borax-Contaminated Leachate Ponds.

Author

Hwang, C, Copeland, A, Lucas, S, Lapidus, A, Barry, K, Detter, JC, Glavina Del Rio, T, Hammon, N, Israni, S, Dalin, E, Tice, H, Pitluck, S, Chertkov, O, Brettin, T, Bruce, D, Han, C, Schmutz, J, Larimer, F, Land, ML, Hauser, L, Kyrpides, N, Mikhailova, N, Ye, Q, Zhou, J, Richardson, P, and Fields, MW

Subjects
Biochemistry and Cell Biology, Genetics, Microbiology
Abstract

Alkaliphilus metalliredigens strain QYMF is an anaerobic, alkaliphilic, and metal-reducing bacterium associated with phylum Firmicutes QYMF was isolated from alkaline borax leachate ponds. The genome sequence will help elucidate the role of metal-reducing microorganisms under alkaline environments, a capability that is not commonly observed in metal respiring-microorganisms.

Published
2016

3. The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)

Author

Tuskan, G.A., DiFazio, S., Jansson, S., Bohlmann, J., Grigoriev, I., Hellsten, U., Putnam, N., Ralph, S., Rombauts, S., Salamov, A., Schein, J., Sterck, L., Aerts, A., Bhalerao, R.R., Bhalerao, R.P., Blaudez, D., Boerjan, W., Brun, A., Brunner, A., Busov, V., Campbell, M., Carlson, J., Chalot, M., Chapman, J., Chen, G.-L., Cooper, D., Coutinho, P.M., Couturier, J., Covert, S., Cronk, Q., Cunningham, R., Davis, J., Degroeve, S., Dejardin, A., dePamphillis, C., Detter, J., Dirks, B., Dubchak, I., Duplessis, S., Ehiting, J., Ellis, B., Gendler, K., Goodstein, D., Gribskov, M., Grimwood, J., Groover, A., Gunter, L., Hamberger, B., Heinze, B., Helariutta, Y., Henrissat, B., Holligan, D., Holt, R., Huang, W., Islam-Faridi, N., Jones, S., Jones-Rhoades, M., Jorgensen, R., Joshi, C., Kangasjarvi, J., Karlsson, J., Kelleher, C., Kirkpatrick, R., Kirst, M., Kohler, A., Kalluri, U., Larimer, F., Leebens-Mack, J., Leple, J.-C., Locascio, P., Lou, Y., Lucas, S., Martin, F., Montanini, B., Napoli, C., Nelson, D.R., Nelson, D., Nieminen, K., Nilsson, O., Peter, G., Philippe, R., Pilate, G., Poliakov, A., Razumovskaya, J., Richardson, P., Rinaldi, C., Ritland, K., Rouze, P., Ryaboy, D., Schmutz, J., Schrader, J., Segerman, B., Shin, H., Siddiqui, A., Sterky, F., Terry, A., Tsai, C., Uberbacher, E., Unneberg, P., and Vahala, J.

Subjects
Basic biological sciences
Published
2006

4. The genome of obligately intracellular Ehrlichia canis reveals themes of complex membrane structure and immune evasion strategies

Author

Mavromatis, K., Kuyler Doyle, C., Lykidis, A., Ivanova, N., Francino, P., Chain, P., Shin, M., Malfatti, S., Larimer, F., Copeland, A., Detter, J.C., Land, M., Richardson, P.M., Yu, X.J., Walker, D.H., McBride, J.W., and Kyrpides, N.C.

Subjects
Basic biological sciences, genome Ehrlichia canis immune evasion
Abstract

Ehrlichia canis, a small obligately intracellular, tick-transmitted, gram-negative, α-proteobacterium is the primary etiologic agent of globally distributed canine monocytic ehrlichiosis. Complete genome sequencing revealed that the E. canis genome consists of a single circular chromosome of 1,315,030 bp predicted to encode 925 proteins, 40 stable RNA species, and 17 putative pseudogenes, and a substantial proportion of non-coding sequence (27 percent). Interesting genome features include a large set of proteins with transmembrane helices and/or signal sequences, and a unique serine-threonine bias associated with the potential for O-glycosylation that was prominent in proteins associated with pathogen-host interactions. Furthermore, two paralogous protein families associated with immune evasion were identified, one of which contains poly G:C tracts, suggesting that they may play a role in phase variation and facilitation of persistent infections. Proteins associated with pathogen-host interactions were identified including a small group of proteins (12) with tandem repeats and another with eukaryotic-like ankyrin domains (7).

Published
2005

5. The genome of the diatom Thalassiosira pseudonana: Ecology, evolution, and metabolism

Author

Ambrust, E.V., Berges, J., Bowler, C., Green, B., Martinez, D., Putnam, N., Zhou, S., Allen, A., Apt, K., Bechner, M., Brzezinski, M., Chaal, B., Chiovitti, A., Davis, A., Goodstein, D., Hadi, M., Hellsten, U., Hildebrand, M., Jenkins, B., Jurka, J., Kapitonov, V., Kroger, N., Lau, W., Lane, T., Larimer, F., Lippmeier, J., Lucas, S., Medina, M., Montsant, A., Obornik, M., Parker, M. Schnitzler, Palenik, B., Pazour, G., Richardson, P., Rynearson, T., Saito, M., Schwartz, D., Thamatrakoln, K., Valentin, K., Vardi, A., Wilkerson, F., Rokhsar, D., Wilkerson, F.P., and Rokhsar, D.S.

Subjects
Basic biological sciences
Published
2004

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