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There is a general consensus that Mars is the next high priority destination for human space exploration. There has been no lack of analysis and recommendations for human missions to Mars, including, for example, the NASA Design Reference Architectures and the Mars Direct proposal. These studies and others usually employ the traditional approach of selecting a baseline mission architecture and running individual trade studies. However, this can cause blind spots, as not all combinations are explored. An alternative approach is to holistically analyze the entire architectural trade-space such that all of the possible system interactions are identified and measured. In such a framework, an optimal design is sought by minimizing cost for maximal value. While cost is relatively easy to model for manned spaceflight, value is more difficult to define. In our efforts to develop a surface base architecture for the MIT Mars 2040 project, we explored several methods for quantifying value, including technology development benefits, challenge, and various metrics for measuring scientific return. We developed a science multi-score method that combines astrobiology and geologic research goals, which is weighted by the crew-member hours that can be used for scientific research rather than other activities.