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Performance prediction plays a key role in product quality control and quality optimization. However, due to the error transmission in the refrigeration compressor assembly process and the imbalance of data collected during the refrigeration compressor assembly process, existing performance prediction methods cannot accurately extract key features of the assembly process resulting in low prediction accuracy. In this paper, a knowledge graph neural network (AKGNN) model with predictive value calibration is proposed for refrigeration compressor performance prediction in two stages. First, a sequence graph attention feature extraction module is designed to extract key features of the assembly process data to cope with the assembly error propagation. Second, to deal with the imbalanced distribution of compressor data, a predictive value calibration (PC) module is designed to calibrate the output of the first stage. Experimental results demonstrate the proposed method outperformed all compared cutting-edge methods in four evaluated indicators. [ABSTRACT FROM AUTHOR]