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Knowledge of the effects of different organic species on soil structure and strength is gained mostly from experiments on natural soils amended with organic substances of various particle sizes, pH, ionic composition, and inorganic impurities. It greatly diversifies the experimental results and shadows individual effects of organic amendments. Therefore, to look for a clearer view, we examined the impact of HCl-washed clay-size organic species: peat, humic acids, residue after humic acid extraction, and two biochars, all derived from the same peat and having similar particles, on the structure and strength of artificial soil silt aggregates using mercury intrusion porosimetry, bulk density measurements, SEM, and uniaxial compression. Bulk density increased due to humic acid addition and decreased for the other amendments. The total pore volumes behaved oppositely. All organic substances except humic acid decreased the pore surface fractal dimension, indicating a smoothening of the pore surface. Humic acid appeared to occupy mostly the spaces between the silt grains skeleton, while the other species were also located upon silt grains. The latter effect was most evident for 600 °C heated biochar. Humic acid, peat, and the residue after humic acid extraction improved mechanical stability, whereas both biochars weakened the aggregates, which means that bulk density plays a smaller role in the mechanical stability of granular materials, as it is usually considered. A new equation relating maximum stress and the amount of the organic additives was proposed.