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Crop residue is an abundant resource for the potential production of biofuels, but a better understanding of its use on net carbon emissions must be developed to mitigate climate change. This analysis combines two established crop growth models (Hybrid-Maize and Soysim) with a simple soil and crop residue respiration model to estimate daily ecosystem respiration (ERe) from maize and soybean; ERe was estimated to be the sum of CO₂ emissions from the oxidation of the growing crop, crop residue, and soil organic carbon (SOC). Model-estimated CO₂ fluxes from irrigated continuous maize and irrigated maize–soybean cropping systems in eastern Nebraska were compared with tower eddy covariance measurements of CO₂ fluxes from 2001 to 2010 from those fields. Modeled C emissions closely estimated measured seasonal patterns of CO₂ dynamics and measured daily ERe (R²: 0.87, 0.84). Measured and modeled annual ERe values were also compared and better agreement was found in maize compared to soybean. As there are limited comparisons of modeled soil emissions with eddy covariance measured CO₂ fluxes, this study is important for the validation of these types of models and to support their potential use in quantifying emissions from crop residue for biofuels.

Net CO₂ exchange data of legume crops at 17 flux tower sites in North America and three sites in Europe representing 29 site-years of measurements were partitioned into gross photosynthesis and ecosystem respiration by using the nonrectangular hyperbolic light-response function method. The analyses produced net CO₂ exchange data and new ecosystem-scale ecophysiological parameter estimates for legume crops determined at diurnal and weekly time steps. Dynamics and annual totals of gross photosynthesis, ecosystem respiration, and net ecosystem production were calculated by gap filling with multivariate nonlinear regression. Comparison with the data from grain crops obtained with the same method demonstrated that CO₂ exchange rates and ecophysiological parameters of legumes were lower than those of maize (Zea mays L.) but higher than for wheat (Triticum aestivum L.) crops. Year-round annual legume crops demonstrated a broad range of net ecosystem production, from sinks of 760 g CO₂ m–² yr–¹ to sources of –2100 g CO₂ m–² yr–¹, with an average of –330 g CO₂ m–² yr–¹, indicating overall moderate CO₂–source activity related to a shorter period of photosynthetic uptake and metabolic costs of N₂ fixation. Perennial legumes (alfalfa, Medicago sativa L.) were strong sinks for atmospheric CO₂, with an average net ecosystem production of 980 (range 550–1200) g CO₂ m–² yr–¹.