1. Genome-wide association study of breakfast skipping links clock regulation with food timing
- Author
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Jacqueline M. Lane, Marta Garaulet, Sirimon Reutrakul, Hoirun Nisa, Kristen L. Knutson, Lydia A. Bazzano, Yanwei Song, Lu Qi, Ruifang Li-Gao, Toshiko Tanaka, Marian L. Neuhouser, Bruce M. Psaty, Martin K. Rutter, Frank A.J.L. Scheer, Tahani Alshehri, Renée de Mutsert, Nicola M. McKeown, Rozenn N. Lemaitre, Richa Saxena, Vesna Boraska Perica, Dennis O. Mook-Kanamori, Dianjianyi Sun, Hassan S. Dashti, Jordi Merino, Traci M. Bartz, Chandler Tucker, Caren E. Smith, and Medical and Clinical Psychology
- Subjects
0301 basic medicine ,Time Factors ,Genotype ,Medicine (miscellaneous) ,030209 endocrinology & metabolism ,Genome-wide association study ,Biology ,GENOTYPE IMPUTATION ,food timing ,breakfast ,GWAS ,chronobiology ,circadian clock ,03 medical and health sciences ,0302 clinical medicine ,food ,Biological Clocks ,DIETARY-INTAKE ,GENETIC-VARIANTS ,Mendelian randomization ,Genetic variation ,UK BIOBANK ,Humans ,EATING PATTERNS ,OXFORD WEBQ ,2. Zero hunger ,Genetics ,Meal ,Nutrition and Dietetics ,CARDIOMETABOLIC RISK-FACTORS ,digestive, oral, and skin physiology ,Genetic Variation ,food and beverages ,Breakfast cereal ,Feeding Behavior ,Heritability ,food.food ,United Kingdom ,3. Good health ,Original Research Communications ,030104 developmental biology ,Gene Expression Regulation ,Meta-analysis ,MENDELIAN RANDOMIZATION ,HEALTH ,TYPE-2 DIABETES RISK ,Body mass index ,Genome-Wide Association Study - Abstract
BackgroundLittle is known about the contribution of genetic variation to food timing, and breakfast has been determined to exhibit the most heritable meal timing. As breakfast timing and skipping are not routinely measured in large cohort studies, alternative approaches include analyses of correlated traits.ObjectivesThe aim of this study was to elucidate breakfast skipping genetic variants through a proxy-phenotype genome-wide association study (GWAS) for breakfast cereal skipping, a commonly assessed correlated trait.MethodsWe leveraged the statistical power of the UK Biobank (n = 193,860) to identify genetic variants related to breakfast cereal skipping as a proxy-phenotype for breakfast skipping and applied several in silico approaches to investigate mechanistic functions and links to traits/diseases. Next, we attempted validation of our approach in smaller breakfast skipping GWAS from the TwinUK (n = 2,006) and the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium (n = 11,963).ResultsIn the UK Biobank, we identified 6 independent GWAS variants, including those implicated for caffeine (ARID3B/CYP1A1), carbohydrate metabolism (FGF21), schizophrenia (ZNF804A), and encoding enzymes important for N6-methyladenosine RNA transmethylation (METTL4, YWHAB, and YTHDF3), which regulates the pace of the circadian clock. Expression of identified genes was enriched in the cerebellum. Genome-wide correlation analyses indicated positive correlations with anthropometric traits. Through Mendelian randomization (MR), we observed causal links between genetically determined breakfast skipping and higher body mass index, more depressive symptoms, and smoking. In bidirectional MR, we demonstrated a causal link between being an evening person and skipping breakfast, but not vice versa. We observed association of our signals in an independent breakfast skipping GWAS in another British cohort (P = 0.032), TwinUK, but not in a meta-analysis of non-British cohorts from the CHARGE consortium (P = 0.095).ConclusionsOur proxy-phenotype GWAS identified 6 genetic variants for breakfast skipping, linking clock regulation with food timing and suggesting a possible beneficial role of regular breakfast intake as part of a healthy lifestyle.
- Published
- 2019
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