1. Analysis of close proximity quenching of phosphorescent metalloporphyrin labels in oligonucleotide structures
- Author
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Paul J. O'Sullivan, Dmitri B. Papkovsky, Martina Burke, Dmitri V. Yashunsky, and Gelii V. Ponomarev
- Subjects
Porphyrins ,Metalloporphyrins ,Molecular Sequence Data ,Oligonucleotides ,chemistry.chemical_element ,Photochemistry ,Biochemistry ,Chemistry Techniques, Analytical ,Analytical Chemistry ,chemistry.chemical_compound ,Environmental Chemistry ,Spectroscopy ,Platinum ,Quenching ,Luminescent Agents ,Base Sequence ,Oligonucleotide ,Nucleic Acid Hybridization ,DNA ,Resonance (chemistry) ,Porphyrin ,chemistry ,Luminescent Measurements ,Oligonucleotide Probes ,Phosphorescence ,Palladium - Abstract
Quenching of phosphorescent platinum(II) and palladium(II) coproporphyrin (MeCP) labelled oligonucleotides was investigated. Strong hybridization-specific quenching was observed in duplex DNA structures with a variety of quenchers and with two identical porphyrin labels when in close proximity. Classical resonance energy transfer mechanism was ruled out, since quenching did not correlate with spectral overlaps and lifetime changes were insignificant. Quenching of MeCP by the free quenchers in solution revealed that porphyrin-porphyrin quenching is predominantly static while other dyes quench dynamically. The results suggest that the quenching in DNA duplex proceeds via direct contact.
- Published
- 2007
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