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A hybrid linear ion trap/orthogonal time-of-flight (TOF) mass spectrometer has been developed to observe time-dependent vacuum ultraviolet photodissociation product ions. In this apparatus, a reflectron TOF mass analyzer is orthogonally interfaced to an LTQ using rf-only octopole and dc quadrupole ion guides. Precursor ions are generated by electrospray ionization and isolated in the ion trap. Subsequently they are directed to the TOF source where photodissociation occurs and product ions are extracted for mass analysis. To detect photodissociation product ions having axially divergent trajectories, a large rectangular detector is utilized. With variation of the time between photodissociation and orthogonal extraction in the TOF source, product ions formed over a range of times after photoexcitation can be sampled. Time-dependent observation of product ions following 157 nm photodissociation of a singly charged tryptic peptide ion (NWDAG-FGR) showed that prompt photofragment ions (x- and v-type ions) dominate the tandem mass spectrum up to 1 [micro]s after the laser shot, but the intensities of low energy thermal fragment ions (y-type ions) become comparable several microseconds later. Different proton mobilization time scales were observed for arginine- and lysine-terminated tryptic peptides. 10.1021/ac9013258

The effect of esterification on MALDI ion yield is investigated by using alcohols having different aliphatic chain lengths. For peptides whose ionization yields increase with derivatization, more hydrophobic alcohols tend to yield greater peak enhancements. The completeness of the reaction increases from propanol to methanol. Undesired solvolysis of the amide group in the side chain of Asn or Gln leads to unexpected ester products. Ethanol is suggested as the optimal alcohol for esterification in proteomics experiments since it yields almost complete esterification without substantial solvolysis. Ethanol esterification was employed to facilitate the identification of gel-separated proteins.

The determination of enantiomeric excess, that is, the relative amount of any pair of optical antipodes, constitutes a integral part of the work of analytical and synthetic chemists involved in natural products research or pharmaceutical development. Mosher's reagent [[Alpha]-methoxy-[Alpha]-(trifluoromethyl)phenylacetyl chloride] has evolved into a major tool for the determination of absolute configuration by NMR. We report here on the separation of diastereomers formed by derivatizing enantiomers with Mosher's reagent. We have shown that reversed-phase liquid-solid adsorption chromatography on carbon surfaces frequently gives considerably superior resolution of diastereomeric pairs than does RPLC on conventional bonded phases. The improved resolution results from the very high sensitivity of solid carbon surfaces to the geometric organization of the solute rather than from differences in column efficiency. We compare the separation of pharmaceutically and biologically important stereoisomeric mixtures, including ([+ or -])-warfarin and ([+ or -])-amino acid esters, on both conventional bonded phases and carbon surfaces prepared by chemical vapor deposition of organic compounds on porous zirconia microparticles.