1. The association of haplotypes in IGFBP-3 gene promoter region and tissue expressions in three pig breeds.
- Author
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Wu, Qingyan, Yu, Hao, Fang, Xibi, Cheng, Yunyun, Dong, Lijie, Wei, Wenzhen, Wang, Gang, Fu, Haoyu, Liu, Songcai, and Hao, Linlin
- Subjects
INSULIN-like growth factor-binding proteins ,HAPLOTYPES ,MINIATURE pigs ,PITUITARY dwarfism ,SINGLE nucleotide polymorphisms ,PROMOTERS (Genetics) ,GENE expression in mammals ,SWINE breeds ,PHYSIOLOGY - Abstract
Bama Xiang pig (BM) and Tibetan mini-pig (TM) are used as experimental animals in China; however, the dwarf molecular mechanisms of these Chinese local pig breeds are unknown. IGFBP-3 affects animal growth, carcass and meat quality. The aim of this study was to identify the polymorphisms in the promoter of theIGFBP-3and analyse their effect on theIGFBP-3mRNA expression level in liver and muscle tissues. High-density single-nucleotide polymorphisms (SNPs) (31) and InDels (5) were detected in the promoter of theIGFBP-3in the BM, TM and Junmu No. 1 White (JM, control) pig breeds from 114 individuals by re-sequencing. A perfect Linkage disequilibrium consisted of 13 SNPs was observed in the promoter region and 2 main haplotypes were identified, of which theh1genotype (GCA-ATGTACATAT) was more prevalent in JM breed than in TM or BM breeds (P < .0001),h2(ATGTGCACG--CGC) was the dominant haplotype in TM and BM breeds (P < .0001). Expression analysis showed that haplotype of the promoter region is highly associated with theIGFBP-3mRNA expression level in liver and muscle tissues of pigs. TheIGFBP-3mRNA expression level was determined higher in the liver and muscle tissues of pigs withh2genotype as compared to that in pigs withh1genotype (P < .05). The results suggest that the SNPs and haplotypes in the promoter of theIGFBP-3gene may serve as useful molecular markers for the body growth traits and the breeding in swine. [ABSTRACT FROM AUTHOR]
- Published
- 2016
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