1. Horsing around : Escherichia coli ST1250 of equine origin harboring epidemic IncHI1/ST9 plasmid with blaCTX-M-1and an operon for short-chain fructooligosaccharide metabolism
- Author
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Valcek, Adam, Sismova, Petra, Nesporova, Kristina, Overballe-Petersen, Søren, Bitar, Ibrahim, Jamborova, Ivana, Kant, Arie, Hrabak, Jaroslav, Wagenaar, Jaap A, Madec, Jean-Yves, Damborg, Peter, van Duijkeren, Engeline, Ewers, Christa, Hordijk, Joost, Hasman, Henrik, Brouwer, Michael S M, Dolejska, Monika, Klinische infectiologie en microb. lab., dI&I I&I-4, University of Veterinary and Pharmaceutical Sciences [Brno] (VFU), Statens Serum Institut [Copenhagen], First Faculty of Medicine Charles University [Prague], Wageningen BioVeterinary Research, Wageningen University and Research [Wageningen] (WUR), Utrecht University [Utrecht], Unité Antibiorésistance et Virulence Bactériennes (AVB), Laboratoire de Lyon [ANSES], Université de Lyon-Agence nationale de sécurité sanitaire de l'alimentation, de l'environnement et du travail (ANSES)-Université de Lyon-Agence nationale de sécurité sanitaire de l'alimentation, de l'environnement et du travail (ANSES), Faculty of Health and Medical Sciences, University of Copenhagen = Københavns Universitet (UCPH), National Institute for Public Health and the Environment [Bilthoven] (RIVM), Justus-Liebig-Universität Gießen = Justus Liebig University (JLU), European Project: 773830, H2020-SFS-2017-1 ,One Health EJP(2018), Department of Bio-engineering Sciences, Klinische infectiologie en microb. lab., and dI&I I&I-4
- Subjects
Operon ,Epidemiology ,Bioinformatica & Diermodellen ,Virulence ,Biology ,Multidrug resistance ,medicine.disease_cause ,Genome ,Epidemiology and Surveillance ,03 medical and health sciences ,Plasmid ,Bio-informatics & Animal models ,ST1250 ,medicine ,Escherichia coli ,Escherichia coli, IncHI1, ST1250, horses, multidrug resistance, plasmids ,Epidemiology, Bio-informatics & Animal models ,Pharmacology (medical) ,Replicon ,Horses ,Gene ,030304 developmental biology ,2. Zero hunger ,Genetics ,Pharmacology ,Host Pathogen Interaction & Diagnostics ,Epidemiologie ,0303 health sciences ,030306 microbiology ,Bacteriologie ,Bacteriology ,Bacteriology, Host Pathogen Interaction & Diagnostics ,[SDV.MP.BAC]Life Sciences [q-bio]/Microbiology and Parasitology/Bacteriology ,Host Pathogen Interactie & Diagnostiek ,3. Good health ,Multiple drug resistance ,Infectious Diseases ,Epidemiologie, Bioinformatica & Diermodellen ,Bacteriologie, Host Pathogen Interactie & Diagnostiek ,IncHI1 ,Plasmids - Abstract
The relatedness of the equine-associated Escherichia coli strain ST1250 and its single- and double-locus variants (ST1250-SLV/DLV), obtained from horses in Europe, was studied by comparative genome analysis. A total of 54 isolates of E. coli ST1250 and ST1250-SLV/DLV from healthy and hospitalized horses across Europe (Czech Republic [n = 23], The Netherlands [n = 18], Germany [n = 9], Denmark [n = 3], and France [n = 1]) from 2008 to 2017 were subjected to whole-genome sequencing. An additional 25 draft genome assemblies of E. coli ST1250 and ST1250- SLV/DLV were obtained from the public databases. The isolates were compared for genomic features, virulence genes, clade structure, and plasmid content. The complete nucleotide sequences of eight IncHI1/ST9 plasmids and one IncHI1/ST2 plasmid were obtained using long-read sequencing by PacBio or MinION. In the collection of 79 isolates, only 10 were phylogenetically close (,8 single nucleotide polymorphisms [SNP]). The majority of isolates belonged to phylogroup B1 (73/79 [92.4%]) and carried blaCTX-M-1 (58/79 [73.4%]). The plasmid content of the isolates was dominated by IncHI1 of ST9 (56/62 [90.3%]) and ST2 (6/62 [9.7%]), while 84.5% (49/58) of the blaCTX-M-1 genes were associated with the presence of the IncHI1 replicon of ST9 and 6.9% (4/58) with the IncHI1 replicon of ST2 within the corresponding isolates. The operon for the utilization of short-chain fructooligosaccharides (the fos operon) was present in 55 of 79 (69.6%) isolates, and all of these carried IncHI1/ST9 plasmids. The eight complete IncHI1/ST9 plasmid sequences showed the presence of blaCTX-M-1 and the fos operon within the same molecule. Sequences of IncHI1/ST9 plasmids were highly conserved (.98% similarity) regardless of country of origin and differed only in the structure and integration site of the multidrug resistance (MDR) region. E. coli ST1250 and ST1250-SLV/DLV are phylogenetically diverse strains associated with horses. A strong linkage of E. coli ST1250 with the epidemic multidrug resistance plasmid lineage IncHI1/ST9 carrying blaCTX-M-1 and the fos operon was identified.
- Published
- 2021