1. Molecular and structural basis for the roles of hepatitis C virus polymerase NS5B amino acids 15, 223, and 321 in viral replication and drug resistance.
- Author
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Lam AM, Edwards TE, Mosley RT, Murakami E, Bansal S, Lugo C, Bao H, Otto MJ, Sofia MJ, and Furman PA
- Subjects
- Antiviral Agents pharmacology, Crystallography, X-Ray, Cyclic P-Oxides pharmacology, Guanosine Monophosphate analogs & derivatives, Guanosine Monophosphate pharmacology, Hepacivirus drug effects, Hepacivirus growth & development, Humans, Nucleosides pharmacology, Protein Structure, Tertiary, RNA, Viral genetics, RNA-Binding Proteins genetics, Drug Resistance, Viral genetics, Hepacivirus genetics, Viral Nonstructural Proteins genetics, Viral Nonstructural Proteins ultrastructure, Virus Replication genetics
- Abstract
Resistance to the 2'-F-2'-C-methylguanosine monophosphate nucleotide hepatitis C virus (HCV) inhibitors PSI-352938 and PSI-353661 was associated with a combination of amino acid changes (changes of S to G at position 15 [S15G], C223H, and V321I) within the genotype 2a nonstructural protein 5B (NS5B), an RNA-dependent RNA polymerase. To understand the role of these residues in viral replication, we examined the effects of single and multiple point mutations on replication fitness and inhibition by a series of nucleotide analog inhibitors. An acidic residue at position 15 reduced replicon fitness, consistent with its proximity to the RNA template. A change of the residue at position 223 to an acidic or large residue reduced replicon fitness, consistent with its proposed proximity to the incoming nucleoside triphosphate (NTP). A change of the residue at position 321 to a charged residue was not tolerated, consistent with its position within a hydrophobic cavity. This triple resistance mutation was specific to both genotype 2a virus and 2'-F-2'-C-methylguanosine inhibitors. A crystal structure of the NS5B S15G/C223H/V321I mutant of the JFH-1 isolate exhibited rearrangement to a conformation potentially consistent with short primer-template RNA binding, which could suggest a mechanism of resistance accomplished through a change in the NS5B conformation, which was better tolerated by genotype 2a virus than by viruses of other genotypes., (Copyright © 2014, American Society for Microbiology. All Rights Reserved.)
- Published
- 2014
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