1. anexVis: visual analytics framework for analysis of RNA expression.
- Author
-
Tran DT, Zhang T, Stutsman R, Might M, Desai UR, and Kuberan B
- Subjects
- Glycosaminoglycans metabolism, Humans, Data Visualization, Gene Expression Profiling methods, Sequence Analysis, RNA methods, Software
- Abstract
Summary: Although RNA expression data are accumulating at a remarkable speed, gaining insights from them still requires laborious analyses, which hinder many biological and biomedical researchers. This report introduces a visual analytics framework that applies several well-known visualization techniques to leverage understanding of an RNA expression dataset. Our analyses on glycosaminoglycan-related genes have demonstrated the broad application of this tool, anexVis (analysis of RNA expression), to advance the understanding of tissue-specific glycosaminoglycan regulation and functions, and potentially other biological pathways., Availability and Implementation: The application is accessible at https://anexvis.chpc.utah.edu/, source codes deposited on GitHub., Supplementary Information: Supplementary data are available at Bioinformatics online.
- Published
- 2018
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