1. Genetic Diagnosis of Charcot-Marie-Tooth Disease in a Population by Next-Generation Sequencing
- Author
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Linda Strand, Øyvind L. Busk, Camilla Furu Skjelbred, Geir J. Braathen, Helle Høyer, Øystein L. Holla, Hilde Tveitan Hilmarsen, Michael Bjørn Russell, and Marit Svendsen
- Subjects
congenital, hereditary, and neonatal diseases and abnormalities ,Article Subject ,Population ,lcsh:Medicine ,Gene mutation ,Biology ,medicine.disease_cause ,Polymorphism, Single Nucleotide ,Genome ,Genetic analysis ,General Biochemistry, Genetics and Molecular Biology ,DNA sequencing ,symbols.namesake ,Charcot-Marie-Tooth Disease ,Gene duplication ,medicine ,Humans ,education ,Genetic Association Studies ,Sanger sequencing ,Genetics ,education.field_of_study ,Mutation ,General Immunology and Microbiology ,Genome, Human ,lcsh:R ,High-Throughput Nucleotide Sequencing ,General Medicine ,nervous system diseases ,Genetics, Population ,symbols ,Corrigendum ,Research Article - Abstract
Charcot-Marie-Tooth (CMT) disease is the most prevalent inherited neuropathy. Today more than 40 CMT genes have been identified. Diagnosing heterogeneous diseases by conventional Sanger sequencing is time consuming and expensive. Thus, more efficient and less costly methods are needed in clinical diagnostics. We included a population based sample of 81 CMT families. Gene mutations had previously been identified in 22 families; the remaining 59 families were analysed by next-generation sequencing. Thirty-two CMT genes and 19 genes causing other inherited neuropathies were included in a custom panel. Variants were classified into five pathogenicity classes by genotype-phenotype correlations and bioinformatics tools. Gene mutations, classified certainly or likely pathogenic, were identified in 37 (46%) of the 81 families. Point mutations in known CMT genes were identified in 21 families (26%), whereas four families (5%) had point mutations in other neuropathy genes,ARHGEF10, POLG, SETX,andSOD1. Eleven families (14%) carried thePMP22duplication and one family carried aMPZduplication (1%). Most mutations were identified not only in known CMT genes but also in other neuropathy genes, emphasising that genetic analysis should not be restricted to CMT genes only. Next-generation sequencing is a cost-effective tool in diagnosis of CMT improving diagnostic precision and time efficiency.
- Published
- 2014