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Relationships among catch, fishing effort, and measures of fish stock abundance have several implications for fisheries research. In this context, spatial and seasonal aspects are of significant importance for management decisions, especially when effort regulation schemes are used. In this paper, the multispecies trawl fishery in the Northern and Central Adriatic Sea was investigated, taking into account the heterogeneous distribution of fish stocks. Two approaches are presented depending on the availability (or not) of fishery-independent indices of stock abundance. The empirical results indicate that (i) aggregation and targeting behaviours affect catches by modifying the relationship between abundance and catch per unit effort and (ii) these relationships are not homogenous across space. Data from the Adriatic Sea is still insufficient to guarantee reliable estimations. However, these preliminary results call into question management decisions being made on the basis of catch per unit effort. Furthermore, the high heterogeneity between the northern and central areas of the sea basin calls for the adoption of spatially explicit management systems.