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Glycosaminoglycan HnFG was extracted from sea cucumber Holothuria nobilis. Its chemical structure was characterized by analyzing the physicochemical properties, oligosaccharides from its mild acid hydrolysates and depolymerized products. The disaccharide d -GalNAc 4S6S -α1,2- l -Fuc 3S -ol found in its mild acid hydrolysates provided a clue for the presence of a unique disaccharide-branch in HnFG. Furthermore, it was confirmed by a series of oligosaccharides from the low-molecular weight HnFG prepared by β-eliminative depolymerization. Combining with the analysis of its peroxide depolymerized products, the precise structure of HnFG was determined: A chondroitin sulfate E (CS-E)-like backbone branched with sulfated monofucoses (~67%) and disaccharides d -GalNAc S -α1,2- l -Fuc 3S (~33%) at O-3 position of each GlcUA. This is the first report on the novel branches in glycosaminoglycan. Biologically, the native and depolymerized HnFG showed potent activities in prolonging the activated partial thrombin time (APTT) and inhibiting intrinsic coagulation Xase (iXase), whereas the oligosaccharides (degree of polymerization ≤6) had no obvious effects. • A glycosaminoglycan HnFG were isolated from sea cucumber Holothuria nobilis. • Structures of fifteen oligomers from hydrolysates and depolymerized HnFG were clarified. • HnFG was partially branched with unique disaccharide GalNAc S -α1,2-Fuc 3S. • Anticoagulant and anti-iXase activities of (d)HnFG and oligomers were discussed. [ABSTRACT FROM AUTHOR]

• A novel FG (AmFG) were extracted from sea cucumber Acaudina molpadioides. • The structures of eight oligosaccharides from depolymerized AmFG were determined. • AmFG branched with unusual disaccharide GalNAc-α1,2-Fuc, besides monosaccharides. • The anticoagulant and anti-iXase activities of AmFG and oligomers were discussed. A fucosylated glycosaminoglycan (AmFG) was extracted from the sea cucumber Acaudina molpadioides. And a series of oligosaccharides were purified from the size-homogeneous fractions, which were prepared from the β-eliminative depolymerized AmFG. According to "bottom-up" strategy, the precise structure of AmFG was elucidated by analyzing the structures of these purified oligosaccharides, combining with NMR analysis of its free-radical depolymerized product. It contained a CS-E-like backbone, and each GlcUA was branched with a mono- or di-sulfated fucose (Fuc) at O -3. Intriguingly, besides two types of monosaccharide branches, Fuc 2S4S (60 %) and Fuc 4S (25 %), that were common in FG, AmFG also contained an unusual disaccharide branch GalNAc-α1,2-Fuc 3S4S (15 %); this is the first report of such a structure in a glycosaminoglycan. Biological assays indicated that native AmFG and its oligosaccharides had potent anticoagulant and intrinsic tenase (iXase) inhibitory activities in a chain length-dependent manner. For these oligosaccharides, octasaccharide was the minimum structural fragment for potent anti-iXase activity, and the disaccharide branch might enhance this activity. [ABSTRACT FROM AUTHOR]