1. MHC-I Genotype Restricts the Oncogenic Mutational Landscape.
- Author
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Marty R, Kaabinejadian S, Rossell D, Slifker MJ, van de Haar J, Engin HB, de Prisco N, Ideker T, Hildebrand WH, Font-Burgada J, and Carter H
- Subjects
- Cell Line, Tumor, Computer Simulation, Female, HeLa Cells, Humans, Male, Monitoring, Immunologic, Proteome, Antigen Presentation, Histocompatibility Antigens Class I genetics, Histocompatibility Antigens Class I immunology, Mutation, Neoplasms immunology
- Abstract
MHC-I molecules expose the intracellular protein content on the cell surface, allowing T cells to detect foreign or mutated peptides. The combination of six MHC-I alleles each individual carries defines the sub-peptidome that can be effectively presented. We applied this concept to human cancer, hypothesizing that oncogenic mutations could arise in gaps in personal MHC-I presentation. To validate this hypothesis, we developed and applied a residue-centric patient presentation score to 9,176 cancer patients across 1,018 recurrent oncogenic mutations. We found that patient MHC-I genotype-based scores could predict which mutations were more likely to emerge in their tumor. Accordingly, poor presentation of a mutation across patients was correlated with higher frequency among tumors. These results support that MHC-I genotype-restricted immunoediting during tumor formation shapes the landscape of oncogenic mutations observed in clinically diagnosed tumors and paves the way for predicting personal cancer susceptibilities from knowledge of MHC-I genotype., (Copyright © 2017 Elsevier Inc. All rights reserved.)
- Published
- 2017
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