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We study generalized gauge theories engineered by taking the low energy limit of the $Dp$ branes wrapping $X \times T^{p-3}$, with $X$ a possibly singular surface in a Calabi-Yau fourfold $Z$. For toric $Z$ and $X$ the partition function can be computed by localization, making it a statistical mechanical model, called the gauge origami. The random variables are the ensembles of Young diagrams. The building block of the gauge origami is associated with a tetrahedron, whose edges are colored by vector spaces. We show the properly normalized partition function is an entire function of the Coulomb moduli, for generic values of the $\Omega$-background parameters. The orbifold version of the theory defines the $qq$-character operators, with and without the surface defects. The analytic properties are the consequence of a relative compactness of the moduli spaces $M({\vec n}, k)$ of crossed and spiked instantons, demonstrated in arXiv:1608.07272., Comment: v2. 26 pages, paper 3 in the series of 5, minor typos; v3. 33 pages, notations streamlined, presentation (hopefully) improved, refs added

We explain Sklyanin's separation of variables in geometrical terms and construct it for Hitchin and Mukai integrable systems. We construct Hilbert schemes of points on $T^{*}\Sigma$ for $\Sigma = {\IC}, {\IC}^{*}$ or elliptic curve, and on ${\bf C}^{2}/{\Gamma}$ and show that their complex deformations are integrable systems of Calogero-Sutherland-Moser type. We present the hyperk\"ahler quotient constructions for Hilbert schemes of points on cotangent bundles to the higher genus curves, utilizing the results of Hurtubise, Kronheimer and Nakajima. Finally we discuss the connections to physics of $D$-branes and string duality., Comment: harvmac, 27 pp. big mode; v2. typos and references corrected

We compute the principal contribution to the index in the supersymmetric quantum mechanical systems which are obtained by reduction to 0+1 dimensions of $\mathcal{N}=1$, $D=4,6,10$ super-Yang-Mills theories with gauge group SU(N). The results are: ${1\over{N^{2}}}$ for $D=4,6$, $\sum_{d | N} {1\over{d^{2}}}$ for D=10. We also discuss the D=3 case., harvmac, 24 pages; v2. references added, typos corrected; v3. one more reference added