It is well known that the water flux and antifouling performance of polyamide (PA) membrane are strongly associated with their surface characters, especially for surface hydrophilicity, roughness, and charge. In this study, a zwitterionic surface TFC reverse osmosis (RO) membrane was fabricated by small molecule 3-bromopropionic (3-BPA) modification on the pristine membrane that fabricated through interfacial polymerization (IP) technique using a new aqueous monomer 4-morpholinobenzene-1,3-diamine (MpMPD) and trimesoyl chloride (TMC). The as-fabricated RO membranes were well analyzed by various techniques, that the zwitterionic MpMPD-PA membrane surface exhibited greatly enhanced hydrophilicity with water contact angle of 28.1° and surface roughness as low as 26.0 nm. The water permeability of membrane MpMPD-PA reached 1.65 L m−2 h−1 bar−1, which exhibited ~24% increase compared to our lab-made MPD membrane, meanwhile kept a high NaCl rejection of 97.8%. In addition, the dynamic fouling experiments illustrated that the zwitterionic surface RO membrane possess excellent fouling resistance to protein BSA, polysaccharides SA, and surfactant SDS. Therefore, this work provide a simple and convenient way to fabricate novel zwitterionic surface RO membrane with high performance from the molecular level design.