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The relationship between the variation of CO 2 flux and the pH of inorganic factors. [Display omitted] • The difference of CO 2 absorption and release is obvious during the day and night. • Yindeer Lake was a net sink of CO 2 during the study period. • The lakes can absorb large amounts of CO 2 every year to slow down global warming. • Meteorological factors controlling CO 2 fluxes differed by time scale. • pH is the main influencing factor controlling CO 2 absorption and release. Carbon sequestration levels in lakes are often underestimated despite being vital for the comprehensive analysis of CO 2 budget and significantly influencing inland lakes in arid areas. In this study, the eddy covariance (EC) technique was used to measure CO 2 flux for six consecutive years during 2012–2017 in a small salt-lake (Yindeer Lake) replenished by groundwater in southeastern Badain Jaran Desert, China. The results indicate that: (1) Yindeer Lake was a net sink of CO 2 , which led to the estimate that the lakes in the Badain Jaran Desert can absorb approximately 1.91 × 103 t of CO 2 per year and help slow down the rate of global warming. (2) The effects of meteorological factors on the CO 2 flux of the lake vary with timescales. (3) Inorganic processes, in which pH is the main influence mechanism, control CO 2 absorption and releases in Yindeer Lake. Thus, the study results provide a new guide for solving the "missing sink" problem. [ABSTRACT FROM AUTHOR]