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Increasing anthropogenic activities on land and at sea underline the demand for easily applicable indices to effectively predict human mediated changes in ecosystem functioning. Here, we propose a novel bioirrigation index (IPc) that is based on body mass, abundance, burrow type, feeding type and injection pocket depth of bottom dwelling animals. The index was validated with combined field (in situ communities) and manipulative (single species) experiments. Results from both community and single-species experimental incubations indicate that IPc is able to predict the bioirrigation rate in different sediment types (mud, fine sand, sand). The trait-based index thus demonstrates robustness in the prediction of animal-mediated functional processes that support biogeochemical functions under variable environmental conditions. Accordingly, we argue that trait-based indices provide a useful tool for the quantitative prediction of ecosystem processes as effect traits provide a direct link to the behavioral mechanisms that drive ecosystem functioning.