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• The ecohydraulic modeling framework is a valuable tool for assessing fish ecology in dammed rivers. • Cascade dam construction could fragment spawning site habitats and reduce fish population abundance in the tailwater zone of the main stream. • Spawning site habitats would improve, leading to an increase in fish population abundance in the backwater zone of tributaries. • The effects of cascade dam construction on endemic fish habitat and population status depend on spawning site location, fish species, and life stages. Cascade dam constructions will alter the habitat of spawning sites and affect fish population in the Lancang River basin. This paper examines the impacts of cascade dam construction on four spawning sites, focusing on two co-distributed and endemic fish species: Schizothorax prenanti and Schizothorax davidi. An ecohydraulic modeling framework that combined hydro-morphodynamic, habitat, and population models was used to investigate changes in habitat quality and fish population under two scenarios: no-dam and with-dam. Fish habitat quality was evaluated using the habitat suitability index, and population fluctuations were assessed by the abundance and density of fish populations at all life stages. The simulation results indicated that cascade dam construction would fragment the spawning site habitat in the tailwater zone of the main stream and result in a decrease in fish population abundance and density. Conversely, spawning site habitats in backwater zone of tributaries would improve, and fish population abundance and density would increase. Additionally, the simulation results showed that the magnitude of fish population variations varied by species and life stages. These results highlight the different responses of spawning site location, fish species, and life stages to dam construction, which can help identify areas of the habitat with higher potential for finer-scale endemic fish conservation and recovery efforts. This study provides a comprehensive framework tool for fish ecological evaluation in dammed rivers, which has the potential to assist decision-makers involved in river ecosystem ecological conservation. [Display omitted] [ABSTRACT FROM AUTHOR]