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Abstract  A three-dimensional hydrodynamic model that includes the effect of drag from macrophytes was applied to Conesus Lake to study the seasonal circulation and thermal structure during spring and early summer. Local weather conditions and stream flow data were used to drive the model. The drag coefficient for macrophytes was calculated as a function of leaf density. In general, the model results show good agreements with the observations, including vertical temperature profiles measured at two locations and average surface temperature derived from calibrated thermal imagery for large-scale simulations of the entire lake. Additional high-resolution simulations were carried out to understand water circulation and transport of sediment and model-generated tracer during hydrometeorological events at stream mouths for two experimental sites. The model results show that the plume development at stream mouths during storm events in Conesus Lake are site-dependent and may either be current- or wind-driven. The results also show a significant effect from the presence of macrophytes on sediment deposition near stream mouths. [ABSTRACT FROM AUTHOR]