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Abstract: Simulations of estuarine bathymetric change over decadal timescales require methods for idealization and reduction of forcing data and boundary conditions. Continuous simulations are hampered by computational and data limitations and results are rarely evaluated with observed bathymetric change data. Bathymetric change data for Suisun Bay, California span the 1867–1990 period with five bathymetric surveys during that period. The four periods of bathymetric change were modeled using a coupled hydrodynamic-sediment transport model operated at the tidal-timescale. The efficacy of idealization techniques was investigated by discontinuously simulating the four periods. The 1867–1887 period, used for calibration of wave energy and sediment parameters, was modeled with an average error of 37% while the remaining periods were modeled with error ranging from 23% to 121%. Variation in post-calibration performance is attributed to temporally variable sediment parameters and lack of bathymetric and configuration data for portions of Suisun Bay and the Delta. Modifying seaward sediment delivery and bed composition resulted in large performance increases for post-calibration periods suggesting that continuous simulation with constant parameters is unrealistic. Idealization techniques which accelerate morphological change should therefore be used with caution in estuaries where parameters may change on sub-decadal timescales. This study highlights the utility and shortcomings of estuarine geomorphic models for estimating past changes in forcing mechanisms such as sediment supply and bed composition. The results further stress the inherent difficulty of simulating estuarine changes over decadal timescales due to changes in configuration, benthic composition, and anthropogenic forcing such as dredging and channelization. [Copyright &y& Elsevier]

Abstract: High-frequency measurements of waves, currents and water column properties were made on a fringing coral reef off northwest Maui, Hawaii, for 15months between 2001 and 2003 to aid in understanding the processes governing flow and turbidity over a range of time scales and their contributions to annual budgets. The summer months were characterized by consistent trade winds and small waves, and under these conditions high-frequency internal bores were commonly observed, there was little net flow or turbidity over the fore reef, and over the reef flat net flow was downwind and turbidity was high. When the trade winds waned or the wind direction deviated from the dominant trade wind orientation, strong alongshore flows occurred into the typically dominant wind direction and lower turbidity was observed across the reef. During the winter, when large storm waves impacted the study area, strong offshore flows and high turbidity occurred on the reef flat and over the fore reef. Over the course of a year, trade wind conditions resulted in the greatest net transport of turbid water due to relatively strong currents, moderate overall turbidity, and their frequent occurrence. Throughout the period of study, near-surface current directions over the fore reef varied on average by more than 41° from those near the seafloor, and the orientation of the currents over the reef flat differed on average by more than 65° from those observed over the fore reef. This shear occurred over relatively short vertical (order of meters) and horizontal (order of hundreds of meters) scales, causing material distributed throughout the water column, including the particles in suspension causing the turbidity (e.g. sediment or larvae) and/or dissolved nutrients and contaminants, to be transported in different directions under constant oceanographic and meteorologic forcing. [Copyright &y& Elsevier]

Abstract: Analysis of a series of historical bathymetric surveys has revealed large changes in morphology and sedimentation from 1856 to 1983 in San Pablo Bay, California. In 1856, the morphology of the bay was complex, with a broad main channel, a major side channel connecting to the Petaluma River, and an ebb-tidal delta crossing shallow parts of the bay. In 1983, its morphology was simpler because all channels except the main channel had filled with sediment and erosion had planed the shallows creating a uniform gently sloping surface. The timing and patterns of geomorphic change and deposition and erosion of sediment were influenced by human activities that altered sediment delivery from rivers. From 1856 to 1887, high sediment delivery (14.1×106 m3/yr) to San Francisco Bay during the hydraulic gold-mining period in the Sierra Nevada resulted in net deposition of 259±14×106 m3 in San Pablo Bay. This rapid deposition filled channels and increased intertidal mudflat area by 60% (37.4±3.4 to 60.6±6.2km2). From 1951 to 1983, 23±3×106 m3 of sediment was eroded from San Pablo Bay as sediment delivery from the Sacramento and San Joaquin Rivers decreased to 2.8×106 m3/yr because of damming of rivers, riverbank protection, and altered land use. Intertidal mudflat area in 1983 was 31.8±3.9km2, similar to that in 1856. Intertidal mudflat distribution in 1983, however, was fairly uniform whereas most of the intertidal mudflats were in the western part of San Pablo Bay in 1856. Sediment delivery, through its affect on shallow parts of the bay, was determined to be a primary control on intertidal mudflat area. San Pablo Bay has been greatly affected by human activities and will likely continue to erode in the near term in response to a diminished sediment delivery from rivers. [Copyright &y& Elsevier]

Abstract: Sediment age profiles reconstructed from a sequence of historical bathymetry changes are used to investigate the subsurface distribution of historical sediments in a subembayment of the San Francisco Estuary. Profiles are created in a grid-based GIS modeling program that stratifies historical deposition into temporal horizons. The model''s reconstructions are supported by comparisons to profiles of 137Cs and excess 210Pb at 12 core sites. The predicted depth of the 1951 sediment horizon is positively correlated to the depth of the first occurrence of 137Cs at sites that have been depositional between recent surveys. Reconstructions at sites that have been erosional since the 1951 survey are supported by a lack of detectable 137Cs and excess 210Pb below the upper 6–16cm of the core. A new data set of predicted near-surface sediment ages was created to illustrate an application of this approach. Results demonstrate other potential applications such as guiding the spatial positioning of future core sites for contaminant measurements. [Copyright &y& Elsevier]

Abstract Coastal wetlands have a long history of degradation and destruction due to human development. Now recognized as one of the most productive ecosystems in the world, substantial efforts are being made to restore this critical habitat. While wetland restoration efforts are generally viewed as beneficial in terms of providing wildlife habitat and flood control, they are often accompanied by dramatic physical and chemical changes that may result in unintended consequences, which are rarely studied. Alviso Slough, a tidal slough in South San Francisco Bay, California, is the site of an ongoing effort to restore former salt-production ponds to intertidal marsh habitat. Restoration is complicated by the fact that (1) the ponds undergoing restoration are severely subsided and (2) subsurface sediments within the slough and surrounding ponds are contaminated with legacy mercury deposits. Due to concerns regarding mercury remobilization, restoration has proceeded in a cautious, methodical manner. To assess the amount of legacy mercury remobilized since restoration began, we developed a technique of combining high-resolution, biannual measurements of bathymetric scour with mercury concentration measurements from sediment cores. We estimate that 52 kg (±3) of mercury was remobilized in the 6 years since restoration began. Net bathymetric change analyses revealed seasonal trends of peak erosion during the winter months and little to no net change during summer months. Our analyses provide crucial insight on the spatial and temporal scales of geomorphic evolution within a tidal slough resulting from both natural (seasonal) variability and restoration actions. The technique presented here could be applied to other study sites and various sediment-associated contaminants of concern to aid in the design and management of restoration projects aiming to minimize negative impacts from legacy contaminants. Highlights • Wetland restoration induced legacy contaminant remobilization in a tidal slough. • A new technique is presented to estimate mercury remobilization from sediment scour. • Slough geomorphology evolved in response to natural and human-induced forcings. [ABSTRACT FROM AUTHOR]