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Both submerged and emergent vegetation plays a fundamental role in coastal bays. Vegetation stabilizes the substrate, increasing resilience to storms. Vegetation also traps sediments favoring accretion and therefore counteracting sea level rise. Previous modeling studies on flow-vegetation-sediment interactions have focused on one specific vegetated community, but we lack a general understanding of the synergistic effects of multiple vegetation species. We focus our study on the Virginia Coast Reserve Long Term Ecological Research (LTER) site, USA, where we apply numerical modeling (Delft3D-SWAN) to investigate the independent and synergistic effects of salt marsh vegetation and seagrass. Our numerical results show that salt marshes and seagrass beds reduce the volume of water entering and exiting the shallow coastal bays up to 15% during each tidal cycle. Vegetation also reduces bed shear stress and hence increases sediment deposition in the bay and marshes up to 10% compared to the no-vegetated case. Our study shows the double benefits of seagrass as an ally of salt marsh in promoting bays resilience. On the one hand, seagrass helps the salt marsh to survive during storms by reducing wave energy; on the other hand, seagrass generates more friction in subtidal parts of the bay where salt marsh cannot survive. [ABSTRACT FROM AUTHOR]