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With increasing primary productivity, ciliates may become the most important members of the microbial loop and form a central linkage in the transformation of microbial production to upper trophic levels. How metazooplankters, especially copepods, regulate ciliate community structure in shallow eutrophic waters is not completely clear. We carried out mesocosm experiments with different cyclopoid copepod enrichments in a shallow eutrophic lake to examine the responses of ciliate community structure and abundance to changes in cyclopoid copepod biomass and to detect any cascading effects on bacterioplankton and edible phytoplankton. Our results indicate that an increase in copepod zooplankton biomass favours the development of small-sized bacterivorous ciliates. This effect is unleashed by the decline of predaceous ciliate abundance, which would otherwise graze effectively on the small-sized ciliates. The inverse relationship between crustacean zooplankton and large predaceous ciliates is an important feature adjusting not only the structure of the ciliate community but also the energy transfer between meta- and protozooplankton. Still we could not detect any cascading effects on bacterio- or phytoplankton that would be caused by the structural changes in the ciliate community.

We estimated the consumption of planktonic ciliates by fish larvae in the Väinameri Sea (a shallow semi-enclosed bay of the Baltic Sea) and Lake Võrtsjärv (a shallow and eutrophic lake). Our primary hypothesis was that planktonic ciliates constitute a substantial component of the diet of fish larvae in both environments. We also assumed that the contribution of ciliates to larval nutrition is bigger in lacustrine than in marine environment because ciliates are usually more abundant in lakes. The nutrition of field collected larval fish was determined by gut content analysis using epifluorescence microscopy. Our study revealed that ciliates occurred in the alimentary tracts of all fish species examined. We discovered that the consumption of ciliates by first-feeding fish larvae contributed approximately 40 and 60% of their total consumed carbon in the Väinameri and in Võrtsjärv, respectively. Ciliates represent essentially important food for fish larvae and sufficient protozoan food may enhance larval growth in the beginning of the exogenous feeding and shorten the most vulnerable period in larval stage before shifting to larger prey. This work was subsidised by institutional research funding IUT 21-02 of the Estonian Ministry of Education and Research, Estonian Science Foundation grants (8511, 8969, 9102) and Swiss Grant for Programme “Enhancing public environmental monitoring capacities”. This work was subsidised by institutional research funding IUT 21-02 of the Estonian Ministry of Education and Research, Estonian Science Foundation grants (8511, 8969, 9102) and Swiss Grant for Programme “Enhancing public environmental monitoring capacities”.

We analysed changes in the abundance, biomass and cell size of the microbial food web community (bacteria, heterotrophicnanoflagellates, ciliates) at contrasting nutrient concentrations and temperatures during a simulated heat wave. We used 24mesocosms mimicking shallow lakes in which two nutrient levels (unenriched and enriched by adding nitrogen and phosphorus)and three different temperature scenarios (ambient, IPCC A2 scenario and A2+%50) are simulated (4 replicates of each).Experiments using the mesocosms have been running un-interrupted since 2003. A 1-month heat wave was imitated by anextra 5◦C increase in the previously heated mesocosms (from 1st July to 1st August 2014). Changes in water temperatureinduced within a few days a strong effect on the microbial food web functioning, demonstrating a quick response of microbialcommunities to the changes in environment, due to their short generation times. Warming and nutrients showed synergisticeffects. Microbial assemblages of heterotrophic nanoflagellates and ciliates responded positively to the heating, the increasebeing largest in the enriched mesocosms. The results indicate that warming and nutrients in combination can set off complexinteractions in the microbial food web functioning. This work was supported by MARS project (ManagingAquatic ecosystems and water Resources under multipleStress, EU 7th Framework Programme, contract no.: 603378)and by institutional grant IUT 21-2 of the Estonian Min-istry of Education and Research. The Danish group wasalso supported by PROGNOS (Predicting in-lake RespOnsesto chanGe using Near real time mOdelS – Water JointProgramme Initiative) and AQUACOSM (Network of Lead-ing European AQUAtic MesoCOSM Facilities ConnectingMountains to Oceans from the Arctic to the Mediterranean),the latter also supporting the Turkish group. Yu Cao issupported by NSF-China (31500296) and CSC (The ChinaScholarship Council). This work was supported by MARS project (ManagingAquatic ecosystems and water Resources under multipleStress, EU 7th Framework Programme, contract no.: 603378)and by institutional grant IUT 21-2 of the Estonian Min-istry of Education and Research. The Danish group wasalso supported by PROGNOS (Predicting in-lake RespOnsesto chanGe using Near real time mOdelS – Water JointProgramme Initiative) and AQUACOSM (Network of Lead-ing European AQUAtic MesoCOSM Facilities ConnectingMountains to Oceans from the Arctic to the Mediterranean),the latter also supporting the Turkish group. Yu Cao issupported by NSF-China (31500296) and CSC (The ChinaScholarship Council).

We investigated the influence of macrophyte composition on ciliate community structure in a large, shallow, eutrophic Lake Vortsjarv. We hypothesized that macrophyte composition must have strong influence on the dispersal of ecologically different ciliate groups in a shallow lake and that more diverse macrophyte stands cause also a greater diversity in the ciliate community. In Vortsjarv macrophyte distribution is spatially strongly polarized both in east–west and north–south directions in relation to abiotic factors. Phragmites australis and Myriophyllum spicatum were the most widespread species occurring in most parts of the lake. Correlation of environmental, macrophyte and planktonic ciliate variables confirmed the suggested spatial gradients. More diverse macrophyte stands supported a high species richness and abundance of epiplanktonic community but showed negative influence on the number and abundance of euplanktonic ciliate taxa. Opposite trends were found relative to the abundance of P. australis. Benthic ciliates showed a similar distribution pattern to euplanktonic taxa being most abundant in sites were the Shannon–Weaver index for macrophytes was low. Strong polarizing effect of the lake's vegetation on planktonic ciliate diversity was reflected in correlations of the number of ciliate taxa as well as the numbers of eu- and epiplanktonic taxa with geographic co-ordinates.

The feeding impact of planktivorous fish on microbial organisms is still poorly understood. We followed the seasonal dynamics of the food web in two natural fishponds for two years: one was stocked with planktivorous whitefish while the other had no planktivorous fish. The aim of the study was the simultaneous assessment of the feeding behaviours of planktivorous fish and of bacterivorous meta-/protozooplankters. We hypothesized that in the presence of planktivorous fish there would be fewer metazooplankton, more protozoans and decreased numbers of bacteria. Our results showed that the amount of metazooplankton eaten by the fish was indeed negatively correlated with metazooplankton biomass. The feeding impact of planktivorous fish in shaping the microbial loop was remarkable. The main grazers of bacteria in the fishpond were ciliates, whereas in the pond without fish these were heterotrophic nanoflagellates. In the fishless pond the role of the top predator shifted to the predaceous metazooplankter Leptodora kindtii which controlled the abundance of herbivorous metazooplankters. We found a negative relationship between the number of bacteria and flagellates in the fishless pond, while the number of bacterivorous ciliates was suppressed by predaceous ciliates. Therefore the bacteria-grazing activity was higher in the absence of planktivorous fish.