223 results on '"Viral Infections (without HIV)"'
Search Results
2. Incorporating health workers’ perspectives into a WHO guideline on personal protective equipment developed during an Ebola virus disease outbreak [version 2; referees: 2 approved]
- Author
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Saskia Den Boon, Constanza Vallenas, Mauricio Ferri, and Susan L. Norris
- Subjects
Research Article ,Articles ,Health Service Delivery & Management of Anesthesia ,Health Systems & Services Research ,Viral Infections (without HIV) ,Guidelines ,World Health Organization ,Values ,Preferences ,Hemorrhagic Fever ,Ebolavirus ,Personal Protective Equipment - Abstract
Background: Ebola virus disease (EVD) health facility transmission can result in infection and death of health workers. The World Health Organization (WHO) supports countries in preparing for and responding to public health emergencies, which often require developing new guidance in short timelines with scarce evidence. The objective of this study was to understand frontline physicians’ and nurses’ perspectives about personal protective equipment (PPE) use during the 2014-2016 EVD outbreak in West Africa and to incorporate these findings into the development process of a WHO rapid advice guideline. Methods : We surveyed frontline physicians and nurses deployed to West Africa between March and September of 2014. Results: We developed the protocol, obtained ethics approval, delivered the survey, analysed the data and presented the findings as part of the evidence-to-decision tables at the expert panel meeting where the recommendations were formulated within eight weeks. Forty-four physicians and nurses responded to the survey. They generally felt at low or extremely low risk of virus transmission with all types of PPE used. Eye protection reduced the ability to provide care, mainly due to impaired visibility because of fogging. Heat and dehydration were a major issue for 76% of the participants using goggles and for 64% using a hood. Both gowns and coveralls were associated with significant heat stress and dehydration. Most participants (59%) were very confident that they were using PPE correctly. Conclusion : Our study demonstrated that it was possible to incorporate primary data on end-users’ preferences into a rapid advice guideline for a public health emergency in difficult field conditions. Health workers perceived a balance between transmission protection and ability to care for patients effectively while wearing PPE. These findings were used by the guideline development expert panel to formulate WHO recommendations on PPE for frontline providers caring for EVD patients in outbreak conditions.
- Published
- 2018
- Full Text
- View/download PDF
3. The immunology of Zika Virus [version 1; referees: 2 approved]
- Author
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Abigail Culshaw, Juthathip Mongkolsapaya, and Gavin Screaton
- Subjects
Review ,Articles ,Immune Response ,Viral Infections (without HIV) ,Zika virus ,dengue virus ,innate immunity ,antibodies ,T cells ,immunopathogenesis ,vaccine - Abstract
Zika virus (ZIKV) was initially thought to cause only mild, self-limiting symptoms. However, recent outbreaks have been associated with the autoimmune disease Guillain-Barré syndrome and causally linked to a congenital malformation known as microcephaly. This has led to an urgent need for a safe and effective vaccine. A comprehensive understanding of the immunology of ZIKV infection is required to aid in the design of such a vaccine. Whilst details of both innate and adaptive immune responses to ZIKV are emerging, further research is needed. As immunopathogenesis has been implicated in poor outcomes following infection with the related dengue virus, identification of cross-reactive immune responses between flaviviruses and the impact they may have on disease progression is also of high importance.
- Published
- 2018
- Full Text
- View/download PDF
4. Human metapneumovirus - what we know now [version 1; referees: 2 approved]
- Author
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Nazly Shafagati and John Williams
- Subjects
Review ,Articles ,Viral Infections (without HIV) ,human metapneumovirus ,acute respiratory infection ,Viral pneumonia - Abstract
Human metapneumovirus (HMPV) is a leading cause of acute respiratory infection, particularly in children, immunocompromised patients, and the elderly. HMPV, which is closely related to avian metapneumovirus subtype C, has circulated for at least 65 years, and nearly every child will be infected with HMPV by the age of 5. However, immunity is incomplete, and re-infections occur throughout adult life. Symptoms are similar to those of other respiratory viral infections, ranging from mild (cough, rhinorrhea, and fever) to more severe (bronchiolitis and pneumonia). The preferred method for diagnosis is reverse transcription-polymerase chain reaction as HMPV is difficult to culture. Although there have been many advances made in the past 16 years since its discovery, there are still no US Food and Drug Administration-approved antivirals or vaccines available to treat HMPV. Both small animal and non-human primate models have been established for the study of HMPV. This review will focus on the epidemiology, transmission, and clinical manifestations in humans as well as the animal models of HMPV pathogenesis and host immune response.
- Published
- 2018
- Full Text
- View/download PDF
5. Incorporating health workers’ perspectives into a WHO guideline on personal protective equipment developed during an Ebola virus disease outbreak [version 1; referees: 2 approved]
- Author
-
Saskia Den Boon, Constanza Vallenas, Mauricio Ferri, and Susan L. Norris
- Subjects
Research Article ,Articles ,Health Service Delivery & Management of Anesthesia ,Health Systems & Services Research ,Viral Infections (without HIV) ,Guidelines ,World Health Organization ,Values ,Preferences ,Hemorrhagic Fever ,Ebolavirus ,Personal Protective Equipment - Abstract
Background: Ebola virus disease (EVD) health facility transmission can result in infection and death of health workers. The World Health Organization (WHO) supports countries in preparing for and responding to public health emergencies, which often require developing new guidance in short timelines with scarce evidence. The objective of this study was to understand frontline physicians’ and nurses’ perspectives about personal protective equipment (PPE) use during the 2014-2016 EVD outbreak in West Africa and to incorporate these findings into the development process of a WHO rapid advice guideline. Methods : We surveyed frontline physicians and nurses deployed to West Africa between March and September of 2014. Results: We developed the protocol, obtained ethics approval, delivered the survey, analysed the data and presented the findings as part of the evidence-to-decision tables at the expert panel meeting where the recommendations were formulated within eight weeks. Forty-four physicians and nurses responded to the survey. They generally felt at low or extremely low risk of virus transmission with all types of PPE used. Eye protection reduced the ability to provide care, mainly due to impaired visibility because of fogging. Heat and dehydration were a major issue for 76% of the participants using goggles and for 64% using a hood. Both gowns and coveralls were associated with significant heat stress and dehydration. Most participants (59%) were very confident that they were using PPE correctly. Conclusion : Our study demonstrated that it was possible to incorporate primary data on end-users’ preferences into a rapid advice guideline for a public health emergency in difficult field conditions. Health workers perceived a balance between transmission protection and ability to care for patients effectively while wearing PPE. These findings were used by the guideline development expert panel to formulate WHO recommendations on PPE for frontline providers caring for EVD patients in outbreak conditions.
- Published
- 2018
- Full Text
- View/download PDF
6. Miltefosine inhibits Chikungunya virus replication in human primary dermal fibroblasts [version 1; referees: 2 approved, 1 approved with reservations]
- Author
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Anuj Sharma, Manish Bhomia, Tze-Jou Yeh, Jay Singh, and Radha K. Maheshwari
- Subjects
Research Article ,Articles ,Viral Infections (without HIV) ,Chikungunya virus ,Akt-activation ,Pi3-akt signaling inhibitors ,FDA approved drug ,miltefosine - Abstract
Background: Chikungunya virus (CHIKV) is a re-emerging pathogen that has caused widespread outbreaks affecting millions of people around the globe. Currently, there is no specific therapeutic drug against CHIKV, with symptomatic treatment only to manage the disease. Pi3-akt signaling has been implicated in infection of several viruses including that of CHIKV. Effect of Pi3-akt signaling inhibitors on CHIKV replication was evaluated in this study. Methods: Human primary dermal fibroblast cells were treated with inhibitors of the Pi3-akt signaling pathway. Suppression of CHIKV replication was evaluated as reduction in virus titer in cell supernatants. Effect of miltefosine (MF) on CHIKV replication was evaluated in pre and post treatment regimen. Inhibition of virus replication was determined by cell growth, virus titer and western blot. Results: Inhibition of Akt-phosphorylation significantly inhibited CHIKV replication. No effect on CHIKV replication was observed after treatment with Pi3-kinase and mTOR activation inhibitors. Further, MF, an FDA-approved Akt-inhibitor, inhibited CHIKV replication in pre- and post-infection treatment regimens. Conclusion: Data suggests that Akt-phosphorylation can be an amenable target of therapy against CHIKV infection. This is the first study to show inhibition of CHIKV replication by MF, and presents a case for further development of MF as an anti-CHIKV drug.
- Published
- 2018
- Full Text
- View/download PDF
7. Recent advances in understanding and managing T-cell lymphoma [version 1; referees: 2 approved]
- Author
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Jun Ho Yi, Seok Jin Kim, and Won Seog Kim
- Subjects
Review ,Articles ,Cancer in the Elderly ,Genomics ,Hematopoietic Stem Cells ,Leukemia & Proliferative Disorders of Hematic Cells ,Lymphomas & Myelomas ,Medical Genetics ,Viral Infections (without HIV) ,T-Cell lymphoma ,PTCL ,T-lymphocytes ,Natural Killer Cells - Abstract
Owing to the rarity of peripheral T-cell lymphoma (PTCL) and the heterogeneity of subtypes, there are no compelling data to guide the therapeutic approaches for such patients. Over the years, there have been remarkable advances in molecular subtyping and treatment of PTCL, although there are still many areas to be explored. In this review, we summarize recent updates on the evolution of understanding and treatment for PTCL.
- Published
- 2017
- Full Text
- View/download PDF
8. Chikungunya: vaccines and therapeutics [version 1; referees: 2 approved]
- Author
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Kothila Tharmarajah, Suresh Mahalingam, and Ali Zaid
- Subjects
Review ,Articles ,Epidemiology ,Global Health ,Immunopharmacology & Hematologic Pharmacology ,Medical Microbiology ,Musculoskeletal Pain & Analgesia ,Musculoskeletal Pharmacology ,Tropical & Travel-Associated Diseases ,Viral Infections (without HIV) ,Virology ,chikiungunya ,vector control ,vaccine development - Abstract
Chikungunya virus (CHIKV) has come to prominence as a global, re-emerging pathogen over the last two decades, progressing from sporadic, remote outbreaks to worldwide explosive epidemics. From contained, though considerable, outbreaks in the southern Indian Ocean, parts of South America and the Caribbean, CHIKV continues to be a significant pathogen in Southeast Asia and India. CHIKV circulates during epidemics through an urban mosquito-to-human transmission cycle, and with no available treatments or licensed vaccines to specifically target CHIKV disease, limiting transmission relies on vector control, which poses significant challenges, especially in developing countries. This review summarizes the current findings and progress in the development of safe, effective and affordable therapeutics and vaccines for CHIKV disease.
- Published
- 2017
- Full Text
- View/download PDF
9. In silico analysis of natural compounds targeting structural and nonstructural proteins of chikungunya virus [version 2; referees: 2 approved]
- Author
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Jaspreet Jain, Anchala Kumari, Pallavi Somvanshi, Abhinav Grover, Somnath Pai, and Sujatha Sunil
- Subjects
Research Article ,Articles ,Bioinformatics ,Viral Infections (without HIV) ,Virology ,In silico analysis ,Chikungunya virus ,natural compounds ,CHIKV E3 protein ,CHIKV Capsid protein ,Docking ,ADME ,Ligand-Protein Interaction - Abstract
Background: Chikungunya fever presents as a high-grade fever during its acute febrile phase and can be prolonged for months as chronic arthritis in affected individuals. Currently, there are no effective drugs or vaccines against this virus. The present study was undertaken to evaluate protein-ligand interactions of all chikungunya virus (CHIKV) proteins with natural compounds from a MolBase library in order to identify potential inhibitors of CHIKV. Methods: Virtual screening of the natural compound library against four non-structural and five structural proteins of CHIKV was performed. Homology models of the viral proteins with unknown structures were created and energy minimized by molecular dynamic simulations. Molecular docking was performed to identify the potential inhibitors for CHIKV. The absorption, distribution, metabolism and excretion (ADME) toxicity parameters for the potential inhibitors were predicted for further prioritization of the compounds. Results: Our analysis predicted three compounds, Catechin-5-O-gallate, Rosmarinic acid and Arjungenin, to interact with CHIKV proteins; two (Catechin-5-O-gallate and Rosmarinic acid) with capsid protein, and one (Arjungenin) with the E3. Conclusion: The compounds identified show promise as potential antivirals, but further in vitro studies are required to test their efficacy against CHIKV.
- Published
- 2017
- Full Text
- View/download PDF
10. Origins and pathogenesis of Middle East respiratory syndrome-associated coronavirus: recent advances [version 1; referees: 3 approved]
- Author
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Stephen A. Goldstein and Susan R. Weiss
- Subjects
Review ,Articles ,Animal Genetics ,Cellular Microbiology & Pathogenesis ,Epidemiology ,Genetics of the Immune System ,Immune Response ,Immunity to Infections ,Leukocyte Signaling & Gene Expression ,Medical Microbiology ,Microbial Evolution & Genomics ,Nosocomial & Healthcare-Associated Infections ,Tropical & Travel-Associated Diseases ,Viral Infections (without HIV) ,Virology ,MERS ,CoV ,origin ,pathogenesis - Abstract
Middle East respiratory syndrome-associated coronavirus (MERS-CoV) has been a significant research focus since its discovery in 2012. Since 2012, 2,040 cases and 712 deaths have been recorded (as of August 11, 2017), representing a strikingly high case fatality rate of 36%. Over the last several years, MERS-CoV research has progressed in several parallel and complementary directions. This review will focus on three particular areas: the origins and evolution of MERS-CoV, the challenges and achievements in the development of MERS-CoV animal models, and our understanding of how novel proteins unique to MERS-CoV counter the host immune response. The origins of MERS-CoV, likely in African bats, are increasingly clear, although important questions remain about the establishment of dromedary camels as a reservoir seeding human outbreaks. Likewise, there have been important advances in the development of animal models, and both non-human primate and mouse models that seem to recapitulate human disease are now available. How MERS-CoV evades and inhibits the host innate immune response remains less clear. Although several studies have identified MERS-CoV proteins as innate immune antagonists, little of this work has been conducted using live virus under conditions of actual infection, but rather with ectopically expressed proteins. Accordingly, considerable space remains for major contributions to understanding unique ways in which MERS-CoV interacts with and modulates the host response. Collectively, these areas have seen significant advances over the last several years but continue to offer exciting opportunities for discovery.
- Published
- 2017
- Full Text
- View/download PDF
11. In silico analysis of natural compounds targeting structural and nonstructural proteins of chikungunya virus [version 1; referees: 1 approved, 1 approved with reservations]
- Author
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Jaspreet Jain, Anchala Kumari, Pallavi Somvanshi, Abhinav Grover, Somnath Pai, and Sujatha Sunil
- Subjects
Research Article ,Articles ,Bioinformatics ,Viral Infections (without HIV) ,Virology ,In silico analysis ,Chikungunya virus ,natural compounds ,CHIKV E3 protein ,CHIKV Capsid protein ,Docking ,ADME ,Ligand-Protein Interaction - Abstract
Background: Chikungunya fever presents as a high-grade fever during its acute febrile phase and can be prolonged for months as chronic arthritis in affected individuals. Currently, there are no effective drugs or vaccines against this virus. The present study was undertaken to evaluate protein-ligand interactions of all chikungunya virus (CHIKV) proteins with natural compounds from a MolBase library in order to identify potential inhibitors of CHIKV. Methods: Virtual screening of the natural compound library against four non-structural and five structural proteins of CHIKV was performed. Homology models of the viral proteins with unknown structures were created and energy minimized by molecular dynamic simulations. Molecular docking was performed to identify the potential inhibitors for CHIKV. The absorption, distribution, metabolism and excretion (ADME) toxicity parameters for the potential inhibitors were predicted for further prioritization of the compounds. Results: Our analysis predicted three compounds, Catechin-5-O-gallate, Rosmarinic acid and Arjungenin, to interact with CHIKV proteins; two (Catechin-5-O-gallate and Rosmarinic acid) with capsid protein, and one (Arjungenin) with the E3. Conclusion: The compounds identified show promise as potential antivirals, but further in vitro studies are required to test their efficacy against CHIKV.
- Published
- 2017
- Full Text
- View/download PDF
12. Recent advances in managing hepatitis D [version 1; referees: 2 approved]
- Author
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Cihan Yurdaydin
- Subjects
Review ,Articles ,Antimicrobials & Drug Resistance ,Cellular Microbiology & Pathogenesis ,Epidemiology ,Immunity to Infections ,Immunomodulation ,Immunopharmacology & Hematologic Pharmacology ,Innate Immunity ,Medical Microbiology ,Viral Hepatitis ,Viral Infections (without HIV) ,Virology ,Hepatitis D Virus ,pegylated interferon ,hepatotrop - Abstract
Hepatitis D virus (HDV) infection leads to the most severe form of chronic viral hepatitis and requires the attention of a liver specialist. In this review, I will recapitulate recent advances in the management of HDV, present background information on HDV infection as well as current chronic hepatitis D treatment, briefly examine the HDV life cycle and discuss new management strategies.
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- 2017
- Full Text
- View/download PDF
13. Rotavirus Vaccines: a story of success with challenges ahead [version 1; referees: 3 approved]
- Author
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Miguel O’Ryan
- Subjects
Review ,Articles ,Antimicrobials & Drug Resistance ,Cellular Microbiology & Pathogenesis ,Environmental Microbiology ,Gastrointestinal Physiology ,Global Health ,Immunity to Infections ,Immunomodulation ,Medical Microbiology ,Pediatric Gastroenterology ,Pediatric Infectious Diseases ,Pharmacokinetics & Drug Delivery ,Preventive Medicine ,Viral Infections (without HIV) ,Virology ,rotavirus ,vaccination ,gastroenteritis ,immunity - Abstract
Approximately 40 years have passed since the discovery of the rotavirus and 10 years since the introduction and progressive dissemination of rotavirus vaccines worldwide. Currently, 92 countries have introduced rotavirus vaccines into national or subnational programs with evident impact in disease reduction. Two vaccines have been widely used, and four additional vaccines have been licensed and are being used in defined regions. In this context, one main issue that remains unsolved is the lower vaccine efficacy/effectiveness in low-income countries. An additional partially answered issue relates to rotavirus strain circulation in vaccinated populations. These issues are discussed in this review. The most imperative challenge ahead is to fulfill the WHO’s recommendation to introduce rotavirus vaccines in all countries.
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- 2017
- Full Text
- View/download PDF
14. Human papillomavirus vaccination: the population impact [version 1; referees: 3 approved]
- Author
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Lai-yang Lee and Suzanne M. Garland
- Subjects
Review ,Articles ,Global Health ,Gynecological Cancers ,Health Systems & Services Research ,Preventive Medicine ,Sexually Transmitted Diseases (without HIV) ,Viral Infections (without HIV) ,HPV vaccination ,prophylactics ,cervical cancer ,prevention - Abstract
We currently have the knowledge and experience to prevent much of human papillomavirus (HPV)-related disease burden globally. In many countries where prophylactic HPV vaccination programs have been adopted as highly effective public health programs with good vaccine coverage, we are already seeing, in real-world settings, reduction of vaccine-related HPV-type infections, genital warts and cervical pre-cancers with potential reductions in vulvar, vaginal and anal pre-cancers. Moreover, we are seeing a change in cervical screening paradigms, as HPV-based screening programs now have strong evidence to support their use as more sensitive ways to detect underlying cervical abnormalities, as compared with conventional cervical cytology. This article describes the impact of prophylactic vaccination on these outcomes and in settings where these vaccines have been implemented in national immunisation programs. Given the successes seen to date and the availability of essential tools, there has been a global push to ensure that every woman has access to effective cervical screening and every girl has the opportunity for primary prevention through vaccination. A gender-neutral approach by offering vaccination to young boys has also been adopted by some countries and is worthy of consideration given that HPV-related cancers also affect males. Furthermore, vaccination of young boys has the advantage of reducing the risk of HPV transmission to sexual partners, lowering the infectious pool of HPV in the general population and ultimately HPV-related diseases for both genders. Therefore, it is appropriate that all countries consider and promote national guidelines and programs to prevent HPV-related diseases.
- Published
- 2017
- Full Text
- View/download PDF
15. Understanding the association between chromosomally integrated human herpesvirus 6 and HIV disease: a cross-sectional study [version 2; referees: 2 approved, 1 approved with reservations]
- Author
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Mundeep K. Kainth, Susan G. Fisher, Diana Fernandez, Amneris Luque, Caroline B. Hall, Anh Thi Hoang, Anisha Lashkari, Alexandra Peck, Lubaba Hasan, and Mary T. Caserta
- Subjects
Research Note ,Articles ,HIV Infection & AIDS: Clinical ,Viral Infections (without HIV) - Abstract
We conducted a cross-sectional investigation to identify evidence of a potential modifying effect of chromosomally integrated human herpes virus 6 (ciHHV-6) on human immunodeficiency virus (HIV) disease progression and/or severity. ciHHV-6 was identified by detecting HHV-6 DNA in hair follicle specimens of 439 subjects. There was no statistically significant relationship between the presence of ciHHV-6 and HIV disease progression to acquired immunodeficiency syndrome. However, after adjusting for use of antiretroviral therapy, all subjects with ciHHV-6 had low severity HIV disease; these findings were not statistically significant. A multi-center study with a larger sample size will be needed to more precisely determine if there is an association between ciHHV-6 and low HIV disease severity.
- Published
- 2017
- Full Text
- View/download PDF
16. Cardiovascular involvement and manifestations of systemic Chikungunya virus infection: A systematic review [version 2; referees: 2 approved, 1 approved with reservations]
- Author
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María Fernanda Alvarez, Adrián Bolívar-Mejía, Alfonso J. Rodriguez-Morales, and Eduardo Ramirez-Vallejo
- Subjects
Systematic Review ,Articles ,Viral Infections (without HIV) ,cardiovascular ,Chikungunya ,clinical ,Colombia ,Latin America - Abstract
Background: In the last three years, chikungunya virus disease has been spreading, affecting particularly the Americas, producing more than two million cases. In this setting, not only new disease-related epidemiological patterns have been found, but also new clinical findings have been reported by different research groups. These include findings on the cardiovascular system, including clinical, electrocardiographic and echocardiographic alterations. No previous systemic reviews have been found in major databases about it. Methods: We performed a systematic review looking for reports about cardiovascular compromise during chikungunya disease. Cardiac compromise is not so common in isolated episodes; but countries where chikungunya virus is an epidemic should be well informed about this condition. We used 6 bibliographical databases as resources: Medline/Pubmed, Embase, ScienceDirect, ClinicalKey, Ovid and SciELO. Dengue reports on cardiovascular compromise were included as well, to compare both arbovirus’ organic compromises. Articles that delved mainly into the rheumatic articular and cutaneous complications were not considered, as they were not in line with the purpose of this study. The type of articles included were reviews, meta-analyses, case-controls, cohort studies, case reports and case series. This systematic review does not reach or performed a meta-analysis. Results: Originally based on 737 articles, our reviewed selected 40 articles with 54.2% at least mentioning CHIKV cardiovascular compromise within the systemic compromise. Cardiovascular manifestations can be considered common and have been reported in France, India, Sri Lanka, Malaysia, Colombia, Venezuela and USA, including mainly, but no limited to: hypotension, shock and circulatory collapse, Raynaud phenomenon, arrhythmias, murmurs, myocarditis, dilated cardiomyopathy, congestive insufficiency, heart failure and altered function profile (Troponins, CPK). Conclusions: Physicians should be encouraged to keep divulgating reports on the cardiovascular involvement of chikungunya virus disease, to raise awareness and ultimately encourage suitable diagnosis and intervention worldwide. More research about cardiovascular involvement and manifestations of systemic Chikungunya virus infection is urgently needed.
- Published
- 2017
- Full Text
- View/download PDF
17. Yellow fever in the Americas: the growing concern about new epidemics [version 2; referees: 2 approved]
- Author
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Yeimer Ortiz-Martínez, Andrés Mauricio Patiño-Barbosa, and Alfonso J. Rodriguez-Morales
- Subjects
Opinion Article ,Articles ,Epidemiology ,Global Health ,Viral Infections (without HIV) ,yellow fever ,epidemics ,Africa ,Americas ,Brazil ,vector-borne disease ,arbovirus - Abstract
Yellow fever (YF) is a haemorrhagic viral disease with a high case fatality rate. It is considered a reemerging infectious disease of remarkable importance. During the last outbreaks in Brazil (2016-2017), many cases of YF emerged despite high YF vaccination coverage in some areas. However, there are many areas and populations worldwide where vaccination coverage has been low for years (e.g. Nigeria), which increases the risk of major epidemics in such areas, as would be the case in many of the American territories. Several factors, including the vast border and migratory status of Brazil, the widespread distribution of Aedes mosquitoes and the lack of efficient health policies and surveillance systems, favor this complex epidemiological scenario of reemergence. Therefore, mass vaccination of the population at risk, public health awareness and preparedness are urgently needed in this region. This opinion article describes the current global epidemiological situation of YF, focusing especially on the Americas, as well the risk and vulnerabilities in the region that would be of concern for major expansion to other countries apart from Brazil. Also, imported risk from endemic area outside of Americas (i.e. Africa) are of current concern.
- Published
- 2017
- Full Text
- View/download PDF
18. Cardiovascular involvement and manifestations of systemic Chikungunya virus infection: A systematic review [version 2; referees: 1 approved, 2 approved with reservations]
- Author
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María Fernanda Alvarez, Adrián Bolívar-Mejía, Alfonso J. Rodriguez-Morales, and Eduardo Ramirez-Vallejo
- Subjects
Viral Infections (without HIV) ,Medicine ,Science - Abstract
Background: In the last three years, chikungunya virus disease has been spreading, affecting particularly the Americas, producing more than two million cases. In this setting, not only new disease-related epidemiological patterns have been found, but also new clinical findings have been reported by different research groups. These include findings on the cardiovascular system, including clinical, electrocardiographic and echocardiographic alterations. No previous systemic reviews have been found in major databases about it. Methods: We performed a systematic review looking for reports about cardiovascular compromise during chikungunya disease. Cardiac compromise is not so common in isolated episodes; but countries where chikungunya virus is an epidemic should be well informed about this condition. We used 6 bibliographical databases as resources: Medline/Pubmed, Embase, ScienceDirect, ClinicalKey, Ovid and SciELO. Dengue reports on cardiovascular compromise were included as well, to compare both arbovirus’ organic compromises. Articles that delved mainly into the rheumatic articular and cutaneous complications were not considered, as they were not in line with the purpose of this study. The type of articles included were reviews, meta-analyses, case-controls, cohort studies, case reports and case series. This systematic review does not reach or performed a meta-analysis. Results: Originally based on 737 articles, our reviewed selected 40 articles with 54.2% at least mentioning CHIKV cardiovascular compromise within the systemic compromise. Cardiovascular manifestations can be considered common and have been reported in France, India, Sri Lanka, Malaysia, Colombia, Venezuela and USA, including mainly, but no limited to: hypotension, shock and circulatory collapse, Raynaud phenomenon, arrhythmias, murmurs, myocarditis, dilated cardiomyopathy, congestive insufficiency, heart failure and altered function profile (Troponins, CPK). Conclusions: Physicians should be encouraged to keep divulgating reports on the cardiovascular involvement of chikungunya virus disease, to raise awareness and ultimately encourage suitable diagnosis and intervention worldwide. More research about cardiovascular involvement and manifestations of systemic Chikungunya virus infection is urgently needed.
- Published
- 2017
- Full Text
- View/download PDF
19. Yellow fever in the Americas: the growing concern about new epidemics [version 1; referees: 1 approved, 1 approved with reservations]
- Author
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Yeimer Ortiz-Martínez, Andrés Mauricio Patiño-Barbosa, and Alfonso J. Rodriguez-Morales
- Subjects
Opinion Article ,Articles ,Epidemiology ,Global Health ,Viral Infections (without HIV) ,yellow fever ,epidemics ,Africa ,Americas ,Brazil ,vector-borne disease ,arbovirus - Abstract
Yellow fever (YF) is a haemorrhagic viral disease with a high case fatality rate. It is considered a reemerging infectious disease of remarkable importance. During the last outbreaks in Angola (2015-2016) and Brazil (2016-2017), many cases of YF emerged despite high YF vaccination coverage, increasing the risk of major epidemics in the Americas. Several factors, including the vast border and migratory status of Brazil, the widespread distribution of Aedes mosquitoes and the lack of efficient health policies and surveillance systems, favour this complex epidemiological scenario of reemergence. Therefore, mass vaccination of the population at risk, public health awareness and preparedness are urgently needed in this region. This article describes the current global epidemiological situation of YF, focusing especially on the Americas, as well the risk and vulnerabilities in the region that would be of concern for major expansion to other countries apart from Brazil.
- Published
- 2017
- Full Text
- View/download PDF
20. Cardiovascular involvement and manifestations of systemic Chikungunya virus infection: A systematic review [version 1; referees: 1 approved, 2 approved with reservations]
- Author
-
María Fernanda Alvarez, Adrián Bolívar-Mejía, Alfonso J. Rodriguez-Morales, and Eduardo Ramirez-Vallejo
- Subjects
Systematic Review ,Articles ,Viral Infections (without HIV) ,cardiovascular ,Chikungunya ,clinical ,Colombia ,Latin America - Abstract
Background: In the last three years, chikungunya virus disease has been spreading, affecting particularly the Americas, producing more than two million cases. In this setting, not only new disease-related epidemiological patterns have been found, but also new clinical findings have been reported by different research groups. These include findings on the cardiovascular system, including clinical, electrocardiographic and echocardiographic alterations. Methods: We performed a systematic review looking for reports about cardiovascular compromise during chikungunya disease. Cardiac compromise is not so common in isolated episodes; but countries where chikungunya virus is an epidemic should be well informed about this condition. We used 6 bibliographical databases as resources: Medline/Pubmed, Embase, ScienceDirect, ClinicalKey, Ovid and SciELO. Dengue reports on cardiovascular affectation were included as well, to compare both arbovirus’ organic affectations. Articles that delved mainly into the rheumatic articular and cutaneous complications were not considered, as they were not in line with the purpose of this study. The type of articles included were reviews, meta-analyses, case-controls, cohort studies, case reports and case series. Results: Originally based on 737 articles, our reviewed selected 40 articles with 54.2% at least mentioning CHIKV cardiovascular compromise within the systemic affectation. Cardiovascular manifestations can be considered common and have been reported in France, India, Sri Lanka, Malaysia, Colombia, Venezuela and USA, including mainly, but no limited to: hypotension, shock and circulatory collapse, Raynaud phenomenon, arrhythmias, murmurs, myocarditis, dilated cardiomyopathy, congestive insufficiency, heart failure and altered function profile (Troponins, CPK). Conclusions: Physicians should be encouraged to keep divulgating reports on the cardiovascular involvement of chikungunya virus disease, to raise awareness and ultimately encourage suitable diagnosis and intervention worldwide.
- Published
- 2017
- Full Text
- View/download PDF
21. Evidence synthesis and decision modelling to support complex decisions: stockpiling neuraminidase inhibitors for pandemic influenza usage [version 2; referees: 2 approved]
- Author
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Samuel I. Watson, Yen-Fu Chen, Jonathan S. Nguyen-Van-Tam, Puja R. Myles, Sudhir Venkatesan, Maria Zambon, Olalekan Uthman, Peter J. Chilton, and Richard J. Lilford
- Subjects
Research Article ,Articles ,Antimicrobials & Drug Resistance ,Molecular Pharmacology ,Pharmacogenomics ,Viral Infections (without HIV) ,Virology ,Pandemic influenza ,evidence synthesis ,bias modelling ,neuraminidase inhibitors ,stockpiling - Abstract
Objectives: The stockpiling of neuraminidase inhibitor (NAI) antivirals as a defence against pandemic influenza is a significant public health policy decision that must be made despite a lack of conclusive evidence from randomised controlled trials regarding the effectiveness of NAIs on important clinical end points such as mortality. The objective of this study was to determine whether NAIs should be stockpiled for treatment of pandemic influenza on the basis of current evidence. Methods: A decision model for stockpiling was designed. Data on previous pandemic influenza epidemiology was combined with data on the effectiveness of NAIs in reducing mortality obtained from a recent individual participant meta-analysis using observational data. Evidence synthesis techniques and a bias modelling method for observational data were used to incorporate the evidence into the model. The stockpiling decision was modelled for adults (≥16 years old) and the United Kingdom was used as an example. The main outcome was the expected net benefits of stockpiling in monetary terms. Health benefits were estimated from deaths averted through stockpiling. Results: After adjusting for biases in the estimated effectiveness of NAIs, the expected net benefit of stockpiling in the baseline analysis was £444 million, assuming a willingness to pay of £20,000/QALY ($31,000/QALY). The decision would therefore be to stockpile NAIs. There was a greater probability that the stockpile would not be utilised than utilised. However, the rare but catastrophic losses from a severe pandemic justified the decision to stockpile. Conclusions: Taking into account the available epidemiological data and evidence of effectiveness of NAIs in reducing mortality, including potential biases, a decision maker should stockpile anti-influenza medication in keeping with the postulated decision rule.
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- 2017
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22. Recent advances in understanding and preventing human papillomavirus-related disease [version 1; referees: 3 approved]
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Karin Hellner and Lucy Dorrell
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Review ,Articles ,Cancer Therapeutics ,Cellular Microbiology & Pathogenesis ,Environmental Microbiology ,Global Health ,Gynecological Cancers ,Gynecologic Inflammation & Infections ,Health Systems & Services Research ,Medical Microbiology ,Preventive Medicine ,Sexually Transmitted Diseases (without HIV) ,Viral Infections (without HIV) ,Virology ,Human papillomavirus ,cervical cancer ,HPV lesions - Abstract
High-risk human papillomaviruses (hrHPV) are responsible for anogenital and oropharyngeal cancers, which together account for at least 5% of cancers worldwide. Industrialised nations have benefitted from highly effective screening for the prevention of cervical cancer in recent decades, yet this vital intervention remains inaccessible to millions of women in low- and middle-income countries (LMICs), who bear the greatest burden of HPV disease. While there is an urgent need to increase investment in basic health infrastructure and rollout of prophylactic vaccination, there are now unprecedented opportunities to exploit recent scientific and technological advances in screening and treatment of pre-invasive hrHPV lesions and to adapt them for delivery at scale in resource-limited settings. In addition, non-surgical approaches to the treatment of cervical intraepithelial neoplasia and other hrHPV lesions are showing encouraging results in clinical trials of therapeutic vaccines and antiviral agents. Finally, the use of next-generation sequencing to characterise the vaginal microbial environment is beginning to shed light on host factors that may influence the natural history of HPV infections. In this article, we focus on recent advances in these areas and discuss their potential for impact on HPV disease.
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- 2017
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23. Lyssaviruses and rabies: current conundrums, concerns, contradictions and controversies [version 1; referees: 2 approved]
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Charles Rupprecht, Ivan Kuzmin, and Francois Meslin
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Review ,Articles ,Epidemiology ,Global Health ,Tropical & Travel-Associated Diseases ,Viral Infections (without HIV) ,Virology ,lyssaviruses ,rabies ,rabies vaccine ,zoonoses - Abstract
Lyssaviruses are bullet-shaped, single-stranded, negative-sense RNA viruses and the causative agents of the ancient zoonosis rabies. Africa is the likely home to the ancestors of taxa residing within the Genus Lyssavirus, Family Rhabdoviridae. Diverse lyssaviruses are envisioned as co-evolving with bats, as the ultimate reservoirs, over seemingly millions of years. In terms of relative distribution, overt abundance, and resulting progeny, rabies virus is the most successful lyssavirus species today, but for unknown reasons. All mammals are believed to be susceptible to rabies virus infection. Besides reservoirs among the Chiroptera, meso-carnivores also serve as major historical hosts and are represented among the canids, raccoons, skunks, mongooses, and ferret badgers. Perpetuating as a disease of nature with the mammalian central nervous system as niche, host breadth alone precludes any candidacy for true eradication. Despite having the highest case fatality of any infectious disease and a burden in excess of or comparative to other major zoonoses, rabies remains neglected. Once illness appears, no treatment is proven to prevent death. Paradoxically, vaccines were developed more than a century ago, but the clear majority of human cases are unvaccinated. Tens of millions of people are exposed to suspect rabid animals and tens of thousands succumb annually, primarily children in developing countries, where canine rabies is enzootic. Rather than culling animal populations, one of the most cost-effective strategies to curbing human fatalities is the mass vaccination of dogs. Building on considerable progress to date, several complementary actions are needed in the near future, including a more harmonized approach to viral taxonomy, enhanced de-centralized laboratory-based surveillance, focal pathogen discovery and characterization, applied pathobiological research for therapeutics, improved estimates of canine populations at risk, actual production of required vaccines and related biologics, strategies to maximize prevention but minimize unnecessary human prophylaxis, and a long-term, realistic plan for sustained global program support to achieve success in disease control, prevention, and elimination.
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- 2017
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24. Cytomegalovirus in pregnancy and the neonate [version 1; referees: 2 approved]
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Vincent C. Emery and Tiziana Lazzarotto
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Review ,Articles ,Cellular Microbiology & Pathogenesis ,Epidemiology ,Immune Response ,Immunity to Infections ,Immunomodulation ,Immunopharmacology & Hematologic Pharmacology ,Innate Immunity ,Leukocyte Activation ,Medical Microbiology ,Microbial Evolution & Genomics ,Pediatric Infectious Diseases ,Preventive Medicine ,Viral Infections (without HIV) ,Virology ,cytomegalovirus ,pathogenesis ,pregnancy ,antiviral therapy - Abstract
Congenital cytomegalovirus (CMV) remains a leading cause of disability in children. Understanding the pathogenesis of infection from the mother via the placenta to the neonate is crucial if we are to produce new interventions and provide supportive mechanisms to improve the outcome of congenitally infected children. In recent years, some major goals have been achieved, including the diagnosis of primary maternal CMV infection in pregnant women by using the anti-CMV IgG avidity test and the diagnosis and prognosis of foetal CMV infection by using polymerase chain reaction real-time tests to detect and quantify the virus in amniotic fluid. This review summarises recent advances in our understanding and highlights where challenges remain, especially in vaccine development and anti-viral therapy of the pregnant woman and the neonate. Currently, no therapeutic options during pregnancy are available except those undergoing clinical trials, whereas valganciclovir treatment is recommended for congenitally infected neonates with moderately to severely symptomatic disease.
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- 2017
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25. Mechanisms of pathogenesis of emerging adenoviruses [version 1; referees: 2 approved]
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James Cook and Jay Radke
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Review ,Articles ,Airway/Respiratory Physiology ,Animal Genetics ,Immune Response ,Immunomodulation ,Innate Immunity ,Leukocyte Signaling & Gene Expression ,Medical Microbiology ,Nosocomial & Healthcare-Associated Infections ,Pediatric Infectious Diseases ,Respiratory Infections ,Respiratory Pediatrics ,Respiratory Problems in Critical Care ,Viral Infections (without HIV) ,Virology ,adenovirus ,immunopathogenesis ,innate immune response ,outbreak - Abstract
Periodic outbreaks of human adenovirus infections can cause severe illness in people with no known predisposing conditions. The reasons for this increased viral pathogenicity are uncertain. Adenoviruses are constantly undergoing mutation during circulation in the human population, but related phenotypic changes of the viruses are rarely detected because of the infrequency of such outbreaks and the limited biological studies of the emergent strains. Mutations and genetic recombinations have been identified in these new strains. However, the linkage between these genetic changes and increased pathogenicity is poorly understood. It has been observed recently that differences in virus-induced immunopathogenesis can be associated with altered expression of non-mutant viral genes associated with changes in viral modulation of the host innate immune response. Initial small animal studies indicate that these changes in viral gene expression can be associated with enhanced immunopathogenesis in vivo. Available evidence suggests the hypothesis that there is a critical threshold of expression of certain viral genes that determines both the sustainability of viral transmission in the human population and the enhancement of immunopathogenesis. Studies of this possibility will require extension of the analysis of outbreak viral strains from a sequencing-based focus to biological studies of relationships between viral gene expression and pathogenic responses. Advances in this area will require increased coordination among public health organizations, diagnostic microbiology laboratories, and research laboratories to identify, catalog, and systematically study differences between prototype and emergent viral strains that explain the increased pathogenicity that can occur during clinical outbreaks.
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- 2017
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26. Recent advances in understanding noroviruses [version 1; referees: 2 approved]
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Eric Bartnicki, Juliana Bragazzi Cunha, Abimbola O. Kolawole, and Christiane E. Wobus
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Review ,Articles ,Antimicrobials & Drug Resistance ,Environmental Microbiology ,Epidemiology ,Gastrointestinal Infections ,Global Health ,Immunity to Infections ,Leukocyte Signaling & Gene Expression ,Medical Microbiology ,Viral Infections (without HIV) ,Virology ,RNA virus ,Calicivirus ,Norovirus ,Viral Tropism ,Viral Entry ,Microbiome ,Gastroenteritis ,microfluidics - Abstract
Noroviruses are the leading cause of acute gastroenteritis around the world. An individual living in the United States is estimated to develop norovirus infection five times in his or her lifetime. Despite this, there is currently no antiviral or vaccine to combat the infection, in large part because of the historical lack of cell culture and small animal models. However, the last few years of norovirus research were marked by a number of ground-breaking advances that have overcome technical barriers and uncovered novel aspects of norovirus biology. Foremost among them was the development of two different in vitro culture systems for human noroviruses. Underappreciated was the notion that noroviruses infect cells of the immune system as well as epithelial cells within the gastrointestinal tract and that human norovirus infection of enterocytes requires or is promoted by the presence of bile acids. Furthermore, two proteinaceous receptors are now recognized for murine norovirus, marking the first discovery of a functional receptor for any norovirus. Recent work further points to a role for certain bacteria, including those found in the gut microbiome, as potential modulators of norovirus infection in the host, emphasizing the importance of interactions with organisms from other kingdoms of life for viral pathogenesis. Lastly, we will highlight the adaptation of drop-based microfluidics to norovirus research, as this technology has the potential to reveal novel insights into virus evolution. This review aims to summarize these new findings while also including possible future directions.
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- 2017
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27. Better than we thought? The diagnostic performance of an influenza point-of-care test in children, a Bayesian re-analysis [version 1; referees: 1 approved with reservations, 1 not approved]
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Joseph Lee
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Research Article ,Articles ,Methods for Diagnostic & Therapeutic Studies ,Statistical Methodologies & Health Informatics ,Viral Infections (without HIV) ,Bayesian latent class models ,influenza ,diagnostic accuracy ,point-of-care test ,near-patient test ,primary care ,paediatrics - Abstract
Background: Point-of-care tests (POCTs) for influenza have been criticised for their diagnostic accuracy, with clinical use limited by low sensitivity. These criticisms are based on diagnostic-accuracy studies that often use the questionable assumption of an infallible gold standard. Bayesian latent class modelling can estimate diagnostic performance without this assumption. Methods: Data extracted from published diagnostic-accuracy studies comparing the QuickVue® influenza A+B influenza POCT to reverse-transcriptase polymerase chain reaction (RT-PCR) in two different populations were re-analysed. Classical and Bayesian latent class methods were applied using the Modelling for Infectious diseases CEntre (MICE) web-based application. Results: Under classical analyses the estimated sensitivity and specificity of the QuickVue® were 66.9% (95% confidence interval (CI) 61.4-71.9) and 97.8% (95% CI 95.7-98.9), respectively. Bayesian latent class models estimated sensitivity of 97.8% (95% credible interval (CrI) 82.1-100) and specificity of 98.5% (95% CrI 96.5-100). Conclusions: Data from studies comparing the QuickVue® point-of-care test to RT-PCR are compatible with better diagnostic performance than previously reported.
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- 2017
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28. Machine learning models identify molecules active against the Ebola virus in vitro [version 3; referees: 2 approved]
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Sean Ekins, Joel S. Freundlich, Alex M. Clark, Manu Anantpadma, Robert A. Davey, and Peter Madrid
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Research Article ,Articles ,Drug Discovery & Design ,Small Molecule Chemistry ,Viral Infections (without HIV) ,Virology ,Drug repurposing ,Ebola Virus ,Computational models ,Machine learning ,Pharmacophore ,Pyronaridine ,Quinacrine ,Tilorone - Abstract
The search for small molecule inhibitors of Ebola virus (EBOV) has led to several high throughput screens over the past 3 years. These have identified a range of FDA-approved active pharmaceutical ingredients (APIs) with anti-EBOV activity in vitro and several of which are also active in a mouse infection model. There are millions of additional commercially-available molecules that could be screened for potential activities as anti-EBOV compounds. One way to prioritize compounds for testing is to generate computational models based on the high throughput screening data and then virtually screen compound libraries. In the current study, we have generated Bayesian machine learning models with viral pseudotype entry assay and the EBOV replication assay data. We have validated the models internally and externally. We have also used these models to computationally score the MicroSource library of drugs to select those likely to be potential inhibitors. Three of the highest scoring molecules that were not in the model training sets, quinacrine, pyronaridine and tilorone, were tested in vitro and had EC 50 values of 350, 420 and 230 nM, respectively. Pyronaridine is a component of a combination therapy for malaria that was recently approved by the European Medicines Agency, which may make it more readily accessible for clinical testing. Like other known antimalarial drugs active against EBOV, it shares the 4-aminoquinoline scaffold. Tilorone, is an investigational antiviral agent that has shown a broad array of biological activities including cell growth inhibition in cancer cells, antifibrotic properties, α7 nicotinic receptor agonist activity, radioprotective activity and activation of hypoxia inducible factor-1. Quinacrine is an antimalarial but also has use as an anthelmintic. Our results suggest data sets with less than 1,000 molecules can produce validated machine learning models that can in turn be utilized to identify novel EBOV inhibitors in vitro.
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- 2017
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29. Respiratory syncytial virus infection: an innate perspective [version 1; referees: 4 approved]
- Author
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Cecilia Johansson
- Subjects
Review ,Articles ,Cellular Microbiology & Pathogenesis ,Environmental Microbiology ,Genetics of the Immune System ,Immunity to Infections ,Innate Immunity ,Leukocyte Signaling & Gene Expression ,Medical Microbiology ,Pediatric Infectious Diseases ,Reproductive Physiology ,Respiratory Infections ,Respiratory Pediatrics ,Viral Infections (without HIV) ,Virology ,RSV ,respiratory syncytial virus ,lower respiratory disease ,immune response to RSV ,immune-mediated virus clearance ,immunopathology - Abstract
Respiratory syncytial virus (RSV) is a common cause of upper respiratory tract infection in children and adults. However, infection with this virus sometimes leads to severe lower respiratory disease and is the major cause of infant hospitalisations in the developed world. Several risk factors such as baby prematurity and congenital heart disease are known to predispose towards severe disease but previously healthy, full-term infants can also develop bronchiolitis and viral pneumonia during RSV infection. The causes of severe disease are not fully understood but may include dysregulation of the immune response to the virus, resulting in excessive recruitment and activation of innate and adaptive immune cells that can cause damage. This review highlights recent discoveries on the balancing act of immune-mediated virus clearance versus immunopathology during RSV infection.
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- 2016
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30. Zika antiviral chemotherapy: identification of drugs and promising starting points for drug discovery from an FDA-approved library [version 1; referees: 2 approved]
- Author
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Bruno S. Pascoalino, Gilles Courtemanche, Marli T. Cordeiro, Laura H. V. G. Gil, and Lucio Freitas-Junior
- Subjects
Research Article ,Articles ,Drug Discovery & Design ,Viral Infections (without HIV) ,Virology ,Zika ,High content screening drug discovery ,FDA-approved drugs - Abstract
Background The recent epidemics of Zika virus (ZIKV) implicated it as the cause of serious and potentially lethal congenital conditions such microcephaly and other central nervous system defects, as well as the development of the Guillain-Barré syndrome in otherwise healthy patients. Recent findings showed that anti-Dengue antibodies are capable of amplifying ZIKV infection by a mechanism similar to antibody-dependent enhancement, increasing the severity of the disease. This scenario becomes potentially catastrophic when the global burden of Dengue and the advent of the newly approved anti-Dengue vaccines in the near future are taken into account. Thus, antiviral chemotherapy should be pursued as a priority strategy to control the spread of the virus and prevent the complications associated with Zika. Methods Here we describe a fast and reliable cell-based, high-content screening assay for discovery of anti-ZIKV compounds. This methodology has been used to screen the National Institute of Health Clinical Collection compound library, a small collection of FDA-approved drugs. Results and conclusion From 725 FDA-approved compounds triaged, 29 (4%) were found to have anti-Zika virus activity, of which 22 had confirmed (76% of confirmation) by dose-response curves. Five candidates presented selective activity against ZIKV infection and replication in a human cell line. These hits have abroad spectrum of chemotypes and therapeutic uses, offering valuable opportunities for selection of leads for antiviral drug discovery.
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- 2016
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31. Complete analysis of the H5 hemagglutinin and N8 neuraminidase phylogenetic trees reveals that the H5N8 subtype has been produced by multiple reassortment events [version 1; referees: 1 approved with reservations, 1 not approved]
- Author
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Andrew R. Dalby
- Subjects
Research Article ,Articles ,Epidemiology ,Genomics ,Viral Infections (without HIV) ,H5N8 ,Guangdong ,hemagglutinin ,neuraminidase ,reassortment ,phylogenetics - Abstract
The analysis of the complete H5 hemagglutinin and H8 neuraminidase phylogenetic trees presented in this paper shows that the H5N8 avian influenza has been generated by multiple reassortment events. The H5N8 strain does not have a single origin and is produced when the H5 hemagglutinin and N8 neuraminidase re-assort from other H5 and N8 containing strains. While it was known that there had been a re-assortment to incorporate the Guangdong H5 hemagglutinin at the start of the Korean outbreak, the results show that there have also been multiple reassortment events amongst the non-Korean sequences.
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- 2016
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32. Advances in understanding COPD [version 1; referees: 3 approved]
- Author
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Gary P. Anderson
- Subjects
Review ,Articles ,Airway/Respiratory Physiology ,Asthma & Allergic Rhinitis ,Bacterial Infections ,COPD & Allied Disorders ,Environmental Microbiology ,Medical Genetics ,Medical Microbiology ,Respiratory Infections ,Respiratory Pharmacology ,Viral Infections (without HIV) ,Chronic Obstructive Pulmonary Disease ,COPD ,ACOS ,COPD Asthma Overlap Syndrome ,Bronchodilators ,Myodebilitation ,Catabasis - Abstract
In recent years, thousands of publications on chronic obstructive pulmonary disease (COPD) and its related biology have entered the world literature, reflecting the increasing scientific and medical interest in this devastating condition. This article is a selective review of several important emerging themes that offer the hope of creating new classes of COPD medicines. Whereas basic science is parsing molecular pathways in COPD, its comorbidities, and asthma COPD overlap syndrome (ACOS) with unprecedented sophistication, clinical translation is disappointingly slow. The article therefore also considers solutions to current difficulties that are impeding progress in translating insights from basic science into clinically useful treatments.
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- 2016
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33. Ending the HIV/AIDS epidemic in low- and middle-income countries by 2030: is it possible? [version 1; referees: 2 approved]
- Author
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Anthony D. Harries, Amitabh B. Suthar, Kudakwashe C. Takarinda, Hannock Tweya, Nang Thu Thu Kyaw, Katie Tayler-Smith, and Rony Zachariah
- Subjects
Review ,Articles ,Antimicrobials & Drug Resistance ,Epidemiology ,Global Health ,HIV Infection & AIDS: Clinical ,Medical Microbiology ,Preventive Medicine ,Social & Behavioral Determinants of Health ,Viral Infections (without HIV) ,Virology ,HIV ,AIDS ,UNAIDS ,antiretroviral therapy - Abstract
The international community has committed to ending the epidemics of HIV/AIDS, tuberculosis, malaria, and neglected tropical infections by 2030, and this bold stance deserves universal support. In this paper, we discuss whether this ambitious goal is achievable for HIV/AIDS and what is needed to further accelerate progress. The joint United Nations Program on HIV/AIDS (UNAIDS) 90-90-90 targets and the related strategy are built upon currently available health technologies that can diagnose HIV infection and suppress viral replication in all people with HIV. Nonetheless, there is much work to be done in ensuring equitable access to these HIV services for key populations and those who remain outside the rims of the traditional health services. Identifying a cure and a preventive vaccine would further help accelerate progress in ending the epidemic. Other disease control programmes could learn from the response to the HIV/AIDS epidemic.
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- 2016
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34. Evidence synthesis and decision modelling to support complex decisions: stockpiling neuraminidase inhibitors for pandemic influenza usage [version 1; referees: 1 approved, 1 approved with reservations]
- Author
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Samuel I. Watson, Yen-Fu Chen, Jonathan S. Nguyen-Van-Tam, Puja R. Myles, Sudhir Venkatesan, Maria Zambon, Olalekan Uthman, Peter J. Chilton, and Richard J. Lilford
- Subjects
Research Article ,Articles ,Antimicrobials & Drug Resistance ,Molecular Pharmacology ,Pharmacogenomics ,Viral Infections (without HIV) ,Virology ,Pandemic influenza ,evidence synthesis ,bias modelling ,neuraminidase inhibitors ,stockpiling - Abstract
Objectives: The stockpiling of neuraminidase inhibitor (NAI) antivirals as a defence against pandemic influenza is a significant public health policy decision that must be made despite a lack of conclusive evidence from randomised controlled trials regarding the effectiveness of NAIs on important clinical end points such as mortality. The objective of this study was to determine whether NAIs should be stockpiled for treatment of pandemic influenza on the basis of current evidence. Methods: A decision model for stockpiling was designed. Data on previous pandemic influenza epidemiology was combined with data on the effectiveness of NAIs in reducing mortality obtained from a recent individual participant meta-analysis using observational data. Evidence synthesis techniques and a bias modelling method for observational data were used to incorporate the evidence into the model. The stockpiling decision was modelled for adults (≥16 years old) and the United Kingdom was used as an example. The main outcome was the expected net benefits of stockpiling in monetary terms. Health benefits were estimated from deaths averted through stockpiling. Results: After adjusting for biases in the estimated effectiveness of NAIs, the expected net benefit of stockpiling in the baseline analysis was £444 million, assuming a willingness to pay of £20,000/QALY ($31,000/QALY). The decision would therefore be to stockpile NAIs. There was a greater probability that the stockpile would not be utilised than utilised. However, the rare but catastrophic losses from a severe pandemic justified the decision to stockpile. Conclusions: Taking into account the available epidemiological data and evidence of effectiveness of NAIs in reducing mortality, including potential biases, a decision maker should stockpile anti-influenza medication in keeping with the postulated decision rule.
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- 2016
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35. Recent advances in understanding and diagnosing hepatitis B virus infection [version 1; referees: 2 approved]
- Author
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Slim Fourati and Jean-Michel Pawlotsky
- Subjects
Review ,Articles ,Antimicrobials & Drug Resistance ,Epidemiology ,Gastrointestinal Cancers ,Global Health ,Immunity to Infections ,Innate Immunity ,Liver Failure & Liver Disease ,Medical Microbiology ,Viral Hepatitis ,Viral Infections (without HIV) ,Virology ,hepatitis B virus ,receptor ,antiviral drugs ,HBV DNA ,HBs antigen - Abstract
Hepatitis B virus (HBV) infects approximately 240 million individuals worldwide. Recent advances in the virology, immunopathogenesis, and diagnosis of HBV infection are summarized in this review article. The identification of a hepatocyte-specific cellular receptor for HBV, the sodium taurocholate co-transporting polypeptide (NTCP), made it possible to develop reliable cell culture systems and better understand the early steps of the viral lifecycle. Viral and host factors involved in covalently closed circular DNA synthesis, stability, and transcriptional regulation have also been identified and provide potential targets for new drugs. Based on recent evidence showing trained immunity in immune-tolerant patients, the immune tolerance and immune clearance phases have been renamed the non-inflammatory and inflammatory phases, respectively. New diagnostic and monitoring tools are now available, including rapid diagnostic tests for hepatitis B surface antigen (HBsAg) detection, HBsAg quantification assays, anti-HBc antibody quantification assays, an HBV core-related antigen (HBcrAg) quantification test, new HBV DNA detection and quantification assays, and an HBV RNA quantification test. Their clinical utility is under study. Finally, new antiviral and immune modulation approaches are in the preclinical or early clinical developmental stages, with the goal to achieve functional cure or ideally (if possible) eradication of HBV infection.
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- 2016
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36. The rise and fall of infectious disease in a warmer world [version 1; referees: 2 approved]
- Author
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Kevin D. Lafferty and Erin A. Mordecai
- Subjects
Review ,Articles ,Bacterial Infections ,Epidemiology ,Global Change Ecology ,Global Health ,Immune Response ,Immunity to Infections ,Medical Microbiology ,Parasitology ,Population Ecology ,Spatial & Landscape Ecology ,Tropical & Travel-Associated Diseases ,Viral Infections (without HIV) ,Virology ,infectious disease ,climate change ,ecology - Abstract
Now-outdated estimates proposed that climate change should have increased the number of people at risk of malaria, yet malaria and several other infectious diseases have declined. Although some diseases have increased as the climate has warmed, evidence for widespread climate-driven disease expansion has not materialized, despite increased research attention. Biological responses to warming depend on the non-linear relationships between physiological performance and temperature, called the thermal response curve. This leads performance to rise and fall with temperature. Under climate change, host species and their associated parasites face extinction if they cannot either thermoregulate or adapt by shifting phenology or geographic range. Climate change might also affect disease transmission through increases or decreases in host susceptibility and infective stage (and vector) production, longevity, and pathology. Many other factors drive disease transmission, especially economics, and some change in time along with temperature, making it hard to distinguish whether temperature drives disease or just correlates with disease drivers. Although it is difficult to predict how climate change will affect infectious disease, an ecological approach can help meet the challenge.
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- 2016
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37. Perinatal neuroprotection update [version 1; referees: 2 approved]
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Angie C. Jelin, Kirsten Salmeen, Dawn Gano, Irina Burd, and Mari-Paule Thiet
- Subjects
Review ,Articles ,Cellular Microbiology & Pathogenesis ,Developmental & Pediatric Neurology ,Epidemiology ,Global Health ,Medical Microbiology ,Neurobiology of Disease & Regeneration ,Neurodevelopment ,Neuropharmacology & Psychopharmacology ,Pediatric Infectious Diseases ,Pregnancy, Labor, Delivery & Postpartum Care ,Preventive Medicine ,Tropical & Travel-Associated Diseases ,Viral Infections (without HIV) ,Virology ,neuroprotection ,Perinatal ,neurological deficits ,Delayed umbilical cord clamping ,preterm delivery ,Zika virus - Abstract
Antepartum, intrapartum, and neonatal events can result in a spectrum of long-term neurological sequelae, including cerebral palsy, cognitive delay, schizophrenia, and autism spectrum disorders [1]. Advances in obstetrical and neonatal care have led to survival at earlier gestational ages and consequently increasing numbers of periviable infants who are at significant risk for long-term neurological deficits. Therefore, efforts to decrease and prevent cerebral insults attempt not only to decrease preterm delivery but also to improve neurological outcomes in infants delivered preterm. We recently published a comprehensive review addressing the impacts of magnesium sulfate, therapeutic hypothermia, delayed cord clamping, infections, and prevention of preterm delivery on the modification of neurological risk [2]. In this review, we will briefly provide updates to the aforementioned topics as well as an expansion on avoidance of toxin and infections, specifically the Zika virus.
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- 2016
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38. Prevalence of hepatitis B and C infections in hemodialysis patients [version 1; referees: 1 approved, 1 approved with reservations, 2 not approved]
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Karina Salvatierra and Hector Florez
- Subjects
Research Article ,Articles ,Epidemiology ,Global Health ,Methods for Diagnostic & Therapeutic Studies ,Methods of Clinical Decision-Making ,Viral Infections (without HIV) ,hepatitis B ,hepatitis C ,chronic kidney failure ,hemodialysis ,serological markers - Abstract
Introduction: Infections with hepatitis B and C viruses (HBV and HCV) are a major global health problem. Patients with chronic renal failure (CRF) on hemodialysis constitute a population at risk of HBV and HCV infections. Objective: Determining prevalence of the surface antigen of hepatitis B virus (HBsAg) and antibodies to hepatitis C virus (anti-HCV) in patients who attended dialysis units in the city of Posadas (Argentina). Materials and methods: The studied population comprised 172 patients with CRF in hemodialysis. HBsAg and anti-HCV antibodies were evaluated by enzyme-linked immunosorbent assay (ELISA). Results: On a total of 172 hemodialysis patients included in the study, 98 were males (57%) and 74 were females (43%), aged between 12 and 85 years (mean 53.4). 8.7% (15/172) of the patients were positive for HBsAg and 9.9% (17/172) were positive for anti-HCV reagents. 72.1% of patients had a hemodialysis treatment time of less than 5 years. A history of having received previous transfusions was observed in both HBsAg positive cases (7/15) and the anti-HCV positive cases (5/17). Elevated transaminase levels were observed in patients with positive and negative serology. Conclusion: The results of this study demonstrate a high prevalence of serological markers for HBV and HCV in patients with CRF on hemodialysis in city of Posadas (Argentina), as compared to cities in developed countries.
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- 2016
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39. An open RNA-Seq data analysis pipeline tutorial with an example of reprocessing data from a recent Zika virus study [version 1; referees: 3 approved]
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Zichen Wang and Avi Ma'ayan
- Subjects
Method Article ,Articles ,Epidemiology ,Methods for Diagnostic & Therapeutic Studies ,Viral Infections (without HIV) ,Virology ,Systems biology ,bioinformatics pipeline ,gene expression analysis ,RNA-seq - Abstract
RNA-seq analysis is becoming a standard method for global gene expression profiling. However, open and standard pipelines to perform RNA-seq analysis by non-experts remain challenging due to the large size of the raw data files and the hardware requirements for running the alignment step. Here we introduce a reproducible open source RNA-seq pipeline delivered as an IPython notebook and a Docker image. The pipeline uses state-of-the-art tools and can run on various platforms with minimal configuration overhead. The pipeline enables the extraction of knowledge from typical RNA-seq studies by generating interactive principal component analysis (PCA) and hierarchical clustering (HC) plots, performing enrichment analyses against over 90 gene set libraries, and obtaining lists of small molecules that are predicted to either mimic or reverse the observed changes in mRNA expression. We apply the pipeline to a recently published RNA-seq dataset collected from human neuronal progenitors infected with the Zika virus (ZIKV). In addition to confirming the presence of cell cycle genes among the genes that are downregulated by ZIKV, our analysis uncovers significant overlap with upregulated genes that when knocked out in mice induce defects in brain morphology. This result potentially points to the molecular processes associated with the microcephaly phenotype observed in newborns from pregnant mothers infected with the virus. In addition, our analysis predicts small molecules that can either mimic or reverse the expression changes induced by ZIKV. The IPython notebook and Docker image are freely available at: http://nbviewer.jupyter.org/github/maayanlab/Zika-RNAseq-Pipeline/blob/master/Zika.ipynb and https://hub.docker.com/r/maayanlab/zika/.
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- 2016
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40. Some vexations that challenge viral immunology [version 1; referees: 2 approved]
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Barry T. Rouse and Scott N. Mueller
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Review ,Articles ,Acute Renal Failure ,HIV Infection & AIDS: Vaccines ,Immune Response ,Immunity to Infections ,Immunomodulation ,Innate Immunity ,Leukocyte Activation ,Leukocyte Development ,Leukocyte Signaling & Gene Expression ,Liver Failure & Liver Disease ,Medical Microbiology ,Viral Hepatitis ,Viral Infections (without HIV) ,Virology ,viral immunology ,vaccine ,immunomodulators ,immunology ,acquired immunity - Abstract
The field of viral immunology seeks to understand mechanisms of virus-host interaction with a view of applying this knowledge to the design of effective vaccines and immunomodulators that control viral infections. This brief review discusses several areas of the field that hold substantial promise for translation, but where further work is critically required to find solutions. We emphasize that our fundamental understanding of virus-host relationships is moving in leaps and bounds, but we lag behind in applying this knowledge to the successful control of many viral infections.
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- 2016
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41. An open RNA-Seq data analysis pipeline tutorial with an example of reprocessing data from a recent Zika virus study [version 1; referees: 2 approved]
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Zichen Wang and Avi Ma'ayan
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Epidemiology ,Methods for Diagnostic & Therapeutic Studies ,Viral Infections (without HIV) ,Virology ,Medicine ,Science - Abstract
RNA-seq analysis is becoming a standard method for global gene expression profiling. However, open and standard pipelines to perform RNA-seq analysis by non-experts remain challenging due to the large size of the raw data files and the hardware requirements for running the alignment step. Here we introduce a reproducible open source RNA-seq pipeline delivered as an IPython notebook and a Docker image. The pipeline uses state-of-the-art tools and can run on various platforms with minimal configuration overhead. The pipeline enables the extraction of knowledge from typical RNA-seq studies by generating interactive principal component analysis (PCA) and hierarchical clustering (HC) plots, performing enrichment analyses against over 90 gene set libraries, and obtaining lists of small molecules that are predicted to either mimic or reverse the observed changes in mRNA expression. We apply the pipeline to a recently published RNA-seq dataset collected from human neuronal progenitors infected with the Zika virus (ZIKV). In addition to confirming the presence of cell cycle genes among the genes that are downregulated by ZIKV, our analysis uncovers significant overlap with upregulated genes that when knocked out in mice induce defects in brain morphology. This result potentially points to the molecular processes associated with the microcephaly phenotype observed in newborns from pregnant mothers infected with the virus. In addition, our analysis predicts small molecules that can either mimic or reverse the expression changes induced by ZIKV. The IPython notebook and Docker image are freely available at: http://nbviewer.jupyter.org/github/maayanlab/Zika-RNAseq-Pipeline/blob/master/Zika.ipynb and https://hub.docker.com/r/maayanlab/zika/.
- Published
- 2016
- Full Text
- View/download PDF
42. Recent advances in managing chronic HCV infection: focus on therapy in patients with severe liver disease [version 1; referees: 3 approved]
- Author
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Raoel Maan and Adriaan J. van der Meer
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Review ,Articles ,Antimicrobials & Drug Resistance ,Cellular Microbiology & Pathogenesis ,Liver Failure & Liver Disease ,Viral Hepatitis ,Viral Infections (without HIV) ,Virology ,HCV ,Hepatitis C Virus ,hepatitis treatment ,Liver disease ,Chronic hepatitis C virus ,interferon - Abstract
Chronic hepatitis C virus (HCV) infection still represents a major public health problem, as it is thought to be responsible for more than 350,000 deaths around the globe on a yearly basis. Fortunately, successful eradication of the virus has been associated with improved clinical outcome and reduced mortality rates. In the past few years, treatment has improved considerably by the implementation of direct-acting antivirals (DAAs). From 2014 onwards, sofosbuvir, simeprevir, daclatasvir, ledipasvir, paritaprevir, ombitasvir, and dasabuvir have been approved by the US Food and Drug Administration (FDA) and European Medicines Agency (EMA). Regimens with various combinations of these new drugs, without the use of interferon (IFN), proved to be very effective and well tolerated, even among patients with advanced liver disease. Moreover, treatment duration could be shortened to 12 weeks in the majority of patients. The high costs of these DAAs, however, limit the availability of IFN-free therapy worldwide. Even in wealthy countries, it is deemed necessary to prioritize DAA treatment in order to limit the immediate impact on the health budget. As patients with advanced liver disease are in most need of HCV clearance, many countries decided to treat those patients first. In the current review, we focus on the currently available IFN-free treatment options for patients with cirrhosis. We discuss the virological efficacy as well as the clinical relevance of these regimens among this specific patient population.
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- 2016
- Full Text
- View/download PDF
43. Management of children with prolonged diarrhea [version 1; referees: 3 approved]
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Antonietta Giannattasio, Alfredo Guarino, and Andrea Lo Vecchio
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Review ,Articles ,Clinical Nutrition ,Disorders of Neurogastroenterology & Motility ,Gastrointestinal Infections ,Global Health ,Pediatric Gastroenterology ,Pediatric Hepatology ,Pediatric Infectious Diseases ,Tropical & Travel-Associated Diseases ,Viral Infections (without HIV) ,Prolonged Diarrhea ,Persistent Diarrhea ,Children ,Malnutrition - Abstract
Prolonged diarrhea is usually defined as acute-onset diarrhea lasting 7 days or more, but less than 14 days. Its trend has been declining in recent years because of improvement in the management of acute diarrhea, which represents the ideal strategy to prevent prolonged diarrhea. The pathogenesis of prolonged diarrhea is multifactorial and essentially based on persistent mucosal damage due to specific infections or sequential infections with different pathogens, host-related factors including micronutrient and/or vitamin deficiency, undernutrition and immunodeficiency, high mucosal permeability due to previous infectious processes and nutrient deficiency with consequential malabsorption, and microbiota disruption. Infections seem to play a major role in causing prolonged diarrhea in both developing and developed areas. However, single etiologic pathogens have not been identified, and the pattern of agents varies according to settings, host risk factors, and previous use of antibiotics and other drugs. The management of prolonged diarrhea is complex. Because of the wide etiologic spectrum, diagnostic algorithms should take into consideration the age of the patient, clinical and epidemiological factors, and the nutritional status and should always include a search for enteric pathogens. Often, expensive laboratory evaluations are of little benefit in guiding therapy, and an empirical approach may be effective in the majority of cases. The presence or absence of weight loss is crucial for driving the initial management of prolonged diarrhea. If there is no weight loss, generally there is no need for further evaluation. If weight loss is present, empiric anti-infectious therapy or elimination diet may be considered once specific etiologies have been excluded.
- Published
- 2016
- Full Text
- View/download PDF
44. Current Landscape of Antiviral Drug Discovery [version 1; referees: 2 approved]
- Author
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Wade Blair and Christopher Cox
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Review ,Articles ,Antimicrobials & Drug Resistance ,Drug Discovery & Design ,HIV Infection & AIDS: Basic Science ,HIV Infection & AIDS: Clinical ,HIV Infection & AIDS: Vaccines ,Immunity to Infections ,Immunomodulation ,Tropical & Travel-Associated Diseases ,Viral Infections (without HIV) ,Virology ,Drug discovery ,heteroaryldihydropyrimidines ,phenylpropenamides ,F-protein ,monoclonal antibody ,influenza ,hepatitis B virus ,human immunodeficiency virus ,respiratory syncytial virus - Abstract
Continued discovery and development of new antiviral medications are paramount for global human health, particularly as new pathogens emerge and old ones evolve to evade current therapeutic agents. Great success has been achieved in developing effective therapies to suppress human immunodeficiency virus (HIV) and hepatitis B virus (HBV); however, the therapies are not curative and therefore current efforts in HIV and HBV drug discovery are directed toward longer-acting therapies and/or developing new mechanisms of action that could potentially lead to cure, or eradication, of the virus. Recently, exciting early clinical data have been reported for novel antivirals targeting respiratory syncytial virus (RSV) and influenza (flu). Preclinical data suggest that these new approaches may be effective in treating high-risk patients afflicted with serious RSV or flu infections. In this review, we highlight new directions in antiviral approaches for HIV, HBV, and acute respiratory virus infections.
- Published
- 2016
- Full Text
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45. Chikungunya: epidemiology [version 1; referees: 2 approved]
- Author
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Lyle R. Petersen and Ann M. Powers
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Review ,Articles ,Epidemiology ,Medical Microbiology ,Physiological Ecology ,Population Ecology ,Tropical & Travel-Associated Diseases ,Viral Infections (without HIV) ,Virology ,Chikungunya ,mosquito ,alphavirus - Abstract
Chikungunya virus is a mosquito-borne alphavirus that causes fever and debilitating joint pains in humans. Joint pains may last months or years. It is vectored primarily by the tropical and sub-tropical mosquito, Aedes aegypti, but is also found to be transmitted by Aedes albopictus, a mosquito species that can also be found in more temperate climates. In recent years, the virus has risen from relative obscurity to become a global public health menace affecting millions of persons throughout the tropical and sub-tropical world and, as such, has also become a frequent cause of travel-associated febrile illness. In this review, we discuss our current understanding of the biological and sociological underpinnings of its emergence and its future global outlook.
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- 2016
- Full Text
- View/download PDF
46. Recent advances in understanding dengue [version 1; referees: 3 approved]
- Author
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Sophie Yacoub, Juthathip Mongkolsapaya, and Gavin Screaton
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Review ,Articles ,Antimicrobials & Drug Resistance ,Drug Discovery & Design ,Immunity to Infections ,Immunomodulation ,Medical Genetics ,Medical Microbiology ,Pediatric Infectious Diseases ,Tropical & Travel-Associated Diseases ,Viral Infections (without HIV) ,Virology ,dengue ,dengue virus ,Flavivirus - Abstract
Dengue is an emerging threat to billions of people worldwide. In the last 20 years, the incidence has increased four-fold and this trend appears to be continuing. Caused by one of four viral serotypes, dengue can present as a wide range of clinical phenotypes with the severe end of the spectrum being defined by a syndrome of capillary leak, coagulopathy, and organ impairment. The pathogenesis of severe disease is thought to be in part immune mediated, but the exact mechanisms remain to be defined. The current treatment of dengue relies on supportive measures with no licensed therapeutics available to date. There have been recent advances in our understanding of a number of areas of dengue research, of which the following will be discussed in this review: the drivers behind the global dengue pandemic, viral structure and epitope binding, risk factors for severe disease and its pathogenesis, as well as the findings of recent clinical trials including therapeutics and vaccines. We conclude with current and future dengue control measures and key areas for future research.
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- 2016
- Full Text
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47. Machine learning models identify molecules active against the Ebola virus in vitro [version 2; referees: 2 approved]
- Author
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Sean Ekins, Joel S. Freundlich, Alex M. Clark, Manu Anantpadma, Robert A. Davey, and Peter Madrid
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Research Article ,Articles ,Drug Discovery & Design ,Small Molecule Chemistry ,Viral Infections (without HIV) ,Virology ,Drug repurposing ,Ebola Virus ,Computational models ,Machine learning ,Pharmacophore ,Pyronaridine ,Quinacrine ,Tilorone - Abstract
The search for small molecule inhibitors of Ebola virus (EBOV) has led to several high throughput screens over the past 3 years. These have identified a range of FDA-approved active pharmaceutical ingredients (APIs) with anti-EBOV activity in vitro and several of which are also active in a mouse infection model. There are millions of additional commercially-available molecules that could be screened for potential activities as anti-EBOV compounds. One way to prioritize compounds for testing is to generate computational models based on the high throughput screening data and then virtually screen compound libraries. In the current study, we have generated Bayesian machine learning models with viral pseudotype entry assay and the EBOV replication assay data. We have validated the models internally and externally. We have also used these models to computationally score the MicroSource library of drugs to select those likely to be potential inhibitors. Three of the highest scoring molecules that were not in the model training sets, quinacrine, pyronaridine and tilorone, were tested in vitro and had EC 50 values of 350, 420 and 230 nM, respectively. Pyronaridine is a component of a combination therapy for malaria that was recently approved by the European Medicines Agency, which may make it more readily accessible for clinical testing. Like other known antimalarial drugs active against EBOV, it shares the 4-aminoquinoline scaffold. Tilorone, is an investigational antiviral agent that has shown a broad array of biological activities including cell growth inhibition in cancer cells, antifibrotic properties, α7 nicotinic receptor agonist activity, radioprotective activity and activation of hypoxia inducible factor-1. Quinacrine is an antimalarial but also has use as an anthelmintic. Our results suggest data sets with less than 1,000 molecules can produce validated machine learning models that can in turn be utilized to identify novel EBOV inhibitors in vitro.
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- 2016
- Full Text
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48. Case Report: Postpartum hemorrhage associated with Dengue with warning signs in a term pregnancy and delivery [version 1; referees: 2 approved, 1 not approved]
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Le Phi Hung, Tran Diem Nghi, Nguyen Hoang Anh, Mai Van Hieu, Nguyen Thien Luan, Nguyen Phuoc Long, and Than Trong Thach
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Case Report ,Articles ,Pregnancy, Labor, Delivery & Postpartum Care ,Viral Infections (without HIV) ,Dengue with warning signs ,pregnancy ,uterine atony ,postpartum hemorrhage ,polyhydramnios - Abstract
Background: Dengue infection during peripartum period, although rare in endemic regions, has challenged clinicians regarding its management, especially if a parturient woman experiences postpartum hemorrhage due to a classical risk factor of maternal bleeding. Case: A full-term pregnant Vietnamese woman was diagnosed with polyhydramnios and Dengue with warning signs (DWS). She was administered platelet transfusion prior to delivery and then gave birth to a healthy newborn. After active management of the third stage of labor, the patient suffered a postpartum hemorrhage which was caused by uterine atony and accompanied with thrombocytopenia. Therefore, we decided to administer uterotonic drugs and additionally transfuse platelets. Conclusion: We describe a case of postpartum hemorrhage caused by uterine atony and coinciding with Dengue infection during delivery period, which is a rare clinical entity. With timely detection and management, the patient was finally discharged without complications.
- Published
- 2015
- Full Text
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49. Progressive Multifocal Leukoencephalopathy [version 1; referees: 2 approved]
- Author
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Laura Adang and Joseph Berger
- Subjects
Review ,Articles ,HIV Infection & AIDS: Clinical ,Infectious Diseases of the Nervous System ,Multiple Sclerosis & Related Disorders ,Neuroimaging ,Viral Infections (without HIV) ,Progressive multifocal leukoencephalopathy ,demyelination ,JC virus ,immunocompromised ,highly active antiretroviral therapy - Abstract
Progressive multifocal leukoencephalopathy (PML) is a devastating demyelinating disease with significant morbidity and mortality and no effective, targeted therapies. It is most often observed in association with abnormalities of cell-mediated immunity, in particular human immunodeficiency virus (HIV) infection, but also occurs in association with lymphoproliferative diseases, certain immunosuppressive and immunomodulatory regimens, and other conditions. The etiologic agent of PML is a small, ubiquitous polyomavirus, the JC virus (JCV, also known as JCPyV), for which at least 50% of the adult general population is seropositive. PML results when JCV replicates within cerebral oligodendrocytes and astrocytes, leading to oligodendrocyte death and demyelination. Unfortunately, no treatments have been convincingly demonstrated to be effective, though some have been employed in desperation; treatment otherwise includes attempts to restore any immune system defect, such as the withdrawal of the causative agent if possible, and general supportive care.
- Published
- 2015
- Full Text
- View/download PDF
50. Varicella Zoster Virus in the Nervous System [version 1; referees: 3 approved]
- Author
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Don Gilden, Maria Nagel, Randall Cohrs, Ravi Mahalingam, and Nicholas Baird
- Subjects
Review ,Articles ,Antimicrobials & Drug Resistance ,Cellular Microbiology & Pathogenesis ,Health Systems & Services Research ,Immune Response ,Immunity to Infections ,Immunomodulation ,Immunopharmacology & Hematologic Pharmacology ,Infectious Diseases of the Nervous System ,Medical Microbiology ,Neurobiology of Disease & Regeneration ,Peripheral Neuropathies ,Preventive Medicine ,Viral Infections (without HIV) ,Virology ,Varicella zoster virus ,VZV ,Latency ,Vasculopathy ,Giant Cell Arteritis ,Immunization - Abstract
Varicella zoster virus (VZV) is a ubiquitous, exclusively human alphaherpesvirus. Primary infection usually results in varicella (chickenpox), after which VZV becomes latent in ganglionic neurons along the entire neuraxis. As VZV-specific cell-mediated immunity declines in elderly and immunocompromised individuals, VZV reactivates and causes herpes zoster (shingles), frequently complicated by postherpetic neuralgia. VZV reactivation also produces multiple serious neurological and ocular diseases, such as cranial nerve palsies, meningoencephalitis, myelopathy, and VZV vasculopathy, including giant cell arteritis, with or without associated rash. Herein, we review the clinical, laboratory, imaging, and pathological features of neurological complications of VZV reactivation as well as diagnostic tests to verify VZV infection of the nervous system. Updates on the physical state of VZV DNA and viral gene expression in latently infected ganglia, neuronal, and primate models to study varicella pathogenesis and immunity are presented along with innovations in the immunization of elderly individuals to prevent VZV reactivation.
- Published
- 2015
- Full Text
- View/download PDF
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