1. Feeding resistant starch to rats alters expression of the cecal cell genome compared to control groups.
- Author
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Keenan, Michael J., Zhou, Jun, Raggio, Anne M., McCutcheon, Kathleen L., Newman, Susan S., Tulley, Richard T., Martin, Roy J., Brown, Ian, Birkett, Anne, and Hegsted, Maren
- Subjects
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STARCH , *RATS , *GENE expression , *GENOMES , *CELLS - Abstract
The study was a microarray (Applied Biosystems, AB) on cecal cells from rats to see effects of resistant starch (RS) on expression of the whole genome: control (CC, 3.6 kcal/g), energy control (EC, 3.2 kcal/g), and RS (3.2 kcal/g, high amylose cornstarch). Male Sprague Dawley (8 wk) rats (RS, n=10; CC and EC, n=9) fed 4 wk. A gene's expression was "present" if signal/noise ≥3. Gene lists were done in R Scripts (t-tests), CC-EC, CC-RS, EC-RS. Lists were >10,000 genes. Differences (p<0.05; <0.01) were: CC-EC, 630; 158; CC-RS, 3193; 1769; EC-RS, 2641; 1301 genes. The Protein Analysis through Evolutionary Relationships of AB was used to determine the number of pathways (CC-EC, 18; CC-RS, 23; EC-RS, 17) affected greater than by random chance (p<0.05); and genes not known in a pathway (CC-EC, 515; CC-RS, 2711; EC-RS, 2266). A large number of hormone genes were affected (CC-EC, 18; CC-RS, 34; EC-RS, 26). Spotfire® was used for clustering analyses. Genes that were up-regulated (down-regulated) by RS were down-regulated (up-regulated) by CC and EC. Cells obtained from the cecum would be a heterogeneous mix therefore, gene expression for RS should result in signaling from the gut to the rest of the body via endocrine, neural, and immune mechanisms. These effects by RS may lead to a healthier phenotype, and decreased risk for chronic diseases such as heart disease, diabetes, and cancer. [ABSTRACT FROM AUTHOR]
- Published
- 2007
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