1. Aromatic rescue of glycine in β sheets
- Author
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Lynne Regan and Jane S. Merkel
- Subjects
Models, Molecular ,Protein Folding ,Stereochemistry ,Mutant ,Protein design ,Glycine ,Beta sheet ,Phenylalanine ,Antiparallel (biochemistry) ,Biochemistry ,03 medical and health sciences ,Protein stability ,strand register ,Animals ,protein design ,030304 developmental biology ,0303 health sciences ,Chemistry ,030302 biochemistry & molecular biology ,Proteins ,β sheet ,protein stability ,glycine–aromatic interactions ,Pairing ,Mutation ,Thermodynamics ,Molecular Medicine - Abstract
Background: Glycine is an intrinsically destabilizing residue in β sheets. In natural proteins, however, this destabilization can be ‘rescued' by specific cross-strand pairing with aromatic residues. Here, we present an experimental study of this effect. Results: Protein variants containing glycine and aromatic residues positioned across β strands in both antiparallel and parallel orientations were studied. The pairing of glycine and phenylalanine across antiparallel strands resulted in a synergistic increase in protein stability. Dramatic differences in stability were observed for the parallel β -sheet mutants, which were dependent upon the type of site occupied by glycine as well as the type of aromatic residue with which it was cross-strand paired. Conclusions: Experimental results from a series of mutants suggest a thermodynamic benefit for glycine–aromatic pairing across antiparallel β strands, consistent with the prevalence of such pairs in natural proteins. We also demonstrate the specificity of glycine–aromatic interactions across parallel β strands, which defines strand register.
- Published
- 1998
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