7 results on '"viromics"'
Search Results
2. Editorial: Advances in viromics: new tools, challenges, and data towards characterizing human and environmental viromes
- Author
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Mária Džunková, Cristina Moraru, and Karthik Anantharaman
- Subjects
bacteriophage ,viromics ,computational tools and databases ,taxonomy ,freshwater ecosystem ,Microbiology ,QR1-502 - Published
- 2023
- Full Text
- View/download PDF
3. Corrigendum: Serum Metabolic Alterations upon Zika Infection
- Author
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Carlos F. O. R. Melo, Jeany Delafiori, Diogo N. de Oliveira, Tatiane M. Guerreiro, Cibele Z. Esteves, Estela de O. Lima, Victoria Pando-Robles, and Rodrigo R. Catharino
- Subjects
Zika virus ,mass spectrometry ,metabolomics ,viromics ,Microbiology ,QR1-502 - Published
- 2017
- Full Text
- View/download PDF
4. Serum Metabolic Alterations upon Zika Infection
- Author
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Carlos Fernando O. R. Melo, Jeany Delafiori, Diogo N. de Oliveira, Tatiane M. Guerreiro, Cibele Z. Esteves, Estela de O. Lima, Victoria Pando-Robles, Rodrigo R. Catharino, the Zika-Unicamp Network, Guilherme P. Milanez, Gabriela M. do Nascimento, André R. R. Freitas, Rodrigo Angerami, Fábio T. Maranhão Costa, Clarice W. Arns, Mariangela R. Resende, Eliana Amaral, Renato P. Junior, Carolina C. Ribeiro-do-Valle, Helaine Milanez, Maria L. Moretti, Jose L. Proenca-Modena, Glaucia M. Pastore, Kleber Y. Fertrin, Márcia T. Garcia, Roseli Calil, João R. B. Júnior, Giuliane J. Lajos, Maria L. Costa, Marcos T. N. da Silva, Albina Altemani, Ana C. Coan, Maria F. Colella-Santos, Andrea P. B. von Zuben, Marco A. R. Vinolo, Rosemeire F. de O. de Paula, Carla C. Judice, Juliana A. Leite, Leonardo C. Caserta, Ana P. de Moraes, Ana C. S. Barnabé, Ana L. R. da Soledade, Daniel A. T. Teixeira, Évellyn R. de Morais, and Felipe R. Santos
- Subjects
Zika virus ,mass spectrometry ,metabolomics ,viromics ,Microbiology ,QR1-502 - Abstract
Zika virus (ZIKV) infection has recently emerged as a major concern worldwide due to its strong association with nervous system malformation (microcephaly) of fetuses in pregnant women infected by the virus. Signs and symptoms of ZIKV infection are often mistaken with other common viral infections. Since transmission may occur through biological fluids exchange and coitus, in addition to mosquito bite, this condition is an important infectious disease. Thus, understanding the mechanism of viral infection has become an important research focus, as well as providing potential targets for assertive clinical diagnosis and quality screening for hemoderivatives. Within this context, the present work analyzed blood plasma from 79 subjects, divided as a control group and a ZIKV-infected group. Samples underwent direct-infusion mass spectrometry and statistical analysis, where eight markers related to the pathophysiological process of ZIKV infection were elected and characterized. Among these, Angiotensin (1-7) and Angiotensin I were upregulated under infection, showing an attempt to induce autophagy of the infected cells. However, this finding is concerning about hypertensive individuals under treatment with inhibitors of the Renin-Angiotensin System (RAS), which could reduce this response against the virus and exacerbate the symptoms of the infection. Moreover, one of the most abundant glycosphingolipids in the nervous tissue, Ganglioside GM2, was also elected in the present study as an infection biomarker. Considered an important pathogen receptor at membrane's outer layer, this finding represents the importance of gangliosides for ZIKV infection and its association with brain tropism. Furthermore, a series of phosphatidylinositols were also identified as biomarkers, implying a significant role of the PI3K-AKT-mTOR Pathway in this mechanism. Finally, these pathways may also be understood as potential targets to be considered in pharmacological intervention studies on ZIKV infection management.
- Published
- 2017
- Full Text
- View/download PDF
5. Serum Metabolic Alterations upon Zika Infection.
- Author
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Melo, Carlos Fernando O. R., Delafiori, Jeany, de Oliveira, Diogo N., Guerreiro, Tatiane M., Esteves, Cibele Z., de O. Lima, Estela, Catharino, Rodrigo R., and Pando-Robles, Victoria
- Subjects
ZIKA virus infections ,BLOOD plasma ,METABOLOMICS ,GENETICS - Abstract
Zika virus (ZIKV) infection has recently emerged as a major concern worldwide due to its strong association with nervous system malformation (microcephaly) of fetuses in pregnant women infected by the virus. Signs and symptoms of ZIKV infection are often mistaken with other common viral infections. Since transmission may occur through biological fluids exchange and coitus, in addition to mosquito bite, this condition is an important infectious disease. Thus, understanding the mechanism of viral infection has become an important research focus, as well as providing potential targets for assertive clinical diagnosis and quality screening for hemoderivatives. Within this context, the present work analyzed blood plasma from 79 subjects, divided as a control group and a ZIKV-infected group. Samples underwent direct-infusion mass spectrometry and statistical analysis, where eight markers related to the pathophysiological process of ZIKV infection were elected and characterized. Among these, Angiotensin (1-7) and Angiotensin I were upregulated under infection, showing an attempt to induce autophagy of the infected cells. However, this finding is concerning about hypertensive individuals under treatment with inhibitors of the Renin-Angiotensin System (RAS), which could reduce this response against the virus and exacerbate the symptoms of the infection. Moreover, one of the most abundant glycosphingolipids in the nervous tissue, Ganglioside GM2, was also elected in the present study as an infection biomarker. Considered an important pathogen receptor at membrane's outer layer, this finding represents the importance of gangliosides for ZIKV infection and its association with brain tropism. Furthermore, a series of phosphatidylinositols were also identified as biomarkers, implying a significant role of the PI3K-AKT-mTOR Pathway in this mechanism. Finally, these pathways may also be understood as potential targets to be considered in pharmacological intervention studies on ZIKV infection management. [ABSTRACT FROM AUTHOR]
- Published
- 2017
- Full Text
- View/download PDF
6. Insights of Phage-Host Interaction in Hypersaline Ecosystem through Metagenomics Analyses.
- Author
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Motlagh, Amir Mohaghegh, Bhattacharjee, Ananda S., Coutinho, Felipe H., Dutilh, Bas E., Casjens, Sherwood R., and Goel, Ramesh K.
- Subjects
BACTERIOPHAGES ,BACTERIOPHAGE-host relationships ,METAGENOMICS - Abstract
Bacteriophages, as the most abundant biological entities on Earth, place significant predation pressure on their hosts. This pressure plays a critical role in the evolution, diversity, and abundance of bacteria. In addition, phages modulate the genetic diversity of prokaryotic communities through the transfer of auxiliary metabolic genes. Various studies have been conducted in diverse ecosystems to understand phage-host interactions and their effects on prokaryote metabolism and community composition. However, hypersaline environments remain among the least studied ecosystems and the interaction between the phages and prokaryotes in these habitats is poorly understood. This study begins to fill this knowledge gap by analyzing bacteriophage-host interactions in the Great Salt Lake, the largest prehistoric hypersaline lake in theWestern Hemisphere. Our metagenomics analyses allowed us to comprehensively identify the bacterial and phage communities with Proteobacteria, Firmicutes, and Bacteroidetes as the most dominant bacterial species and Siphoviridae, Myoviridae, and Podoviridae as the most dominant viral families found in the metagenomic sequences. We also characterized interactions between the phage and prokaryotic communities of Great Salt Lake and determined how these interactions possibly influence the community diversity, structure, and biogeochemical cycles. In addition, presence of prophages and their interaction with the prokaryotic host was studied and showed the possibility of prophage induction and subsequent infection of prokaryotic community present in the Great Salt Lake environment under different environmental stress factors. We found that carbon cycle was the most susceptible nutrient cycling pathways to prophage induction in the presence of environmental stresses. This study gives an enhanced snapshot of phage and prokaryote abundance and diversity as well as their interactions in a hypersaline complex ecosystem, which can pave the way for further research studies. [ABSTRACT FROM AUTHOR]
- Published
- 2017
- Full Text
- View/download PDF
7. Corrigendum: Serum Metabolic Alterations upon Zika Infection.
- Author
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Melo CFOR, Delafiori J, de Oliveira DN, Guerreiro TM, Esteves CZ, Lima EO, Pando-Robles V, and Catharino RR
- Abstract
[This corrects the article on p. 1954 in vol. 8, PMID: 29067015.].
- Published
- 2017
- Full Text
- View/download PDF
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