1. LymphTF-DB: a database of transcription factors involved in lymphocyte development.
- Author
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Childress PJ, Fletcher RL, and Perumal NB
- Subjects
- Animals, Humans, Internet, Lymphocytes immunology, Transcription Factors classification, Databases, Genetic, Lymphocytes physiology, Transcription Factors genetics, Transcription Factors metabolism, Transcription, Genetic
- Abstract
B and T cells develop following a similar early stepwise progression to later stages where multiple developmental options are available. These developmental regimes necessitate differential gene expression regulated by a large number of transcription factors (TFs). The resultant burgeoning amount of information has opened a knowledge gap between TF activities during lymphocyte development and a researcher's experiments. We have created the LymphTF database (DB) to fill this gap. This DB holds interactions between individual TFs and their specific targets at a given developmental time. By storing such interactions as a function of developmental progression, we hope to advance the elucidation of regulatory networks that guide lymphocyte development. Besides queries for TF-target gene interactions in developmental stages, the DB provides a graphical representation of downloadable target gene regulatory sequences with locations of the transcriptional start sites and TF-binding sites. The LymphTF-DB can be accessed freely on the web at http://www.iupui.edu/~tfinterx/.
- Published
- 2007
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