1. Combined transcriptomics and proteomics studies on the effect of electrical stimulation on spinal cord injury in rats
- Author
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Erliang Li, Rongbao Yan, Huanhuan Qiao, Jin Sun, Peng Zou, Jiaqi Chang, Shuang Li, Qiong Ma, Rui Zhang, and Bo Liao
- Subjects
Spinal cord injury ,Electrical stimulation ,Proteomics ,Sonic hedgehog signal pathway ,Transcriptomics ,Science (General) ,Q1-390 ,Social sciences (General) ,H1-99 - Abstract
Electrical stimulation (ES) of the spinal cord is a promising therapy for functional rehabilitation after spinal cord injury (SCI). However, the specific mechanism of action is poorly understood. We designed and applied an implanted ES device in the SCI area in rats and determined the effect of ES on the treatment of motor dysfunction after SCI using behavioral scores. Additionally, we examined the molecular characteristics of the samples using proteomic and transcriptomic sequencing. The differential molecules between groups were identified using statistical analyses. Molecular, network, and pathway-based analyses were used to identify group-specific biological features. ES (0.5 mA, 0.1 ms, 50 Hz) had a positive effect on motor dysfunction and neuronal regeneration in rats after SCI. Six samples (three independent replicates in each group) were used for transcriptome sequencing; we obtained 1026 differential genes, comprising 274 upregulated genes and 752 downregulated genes. A total of 10 samples were obtained: four samples in the ES group and six samples in the SCI group; for the proteome sequencing, 48 differential proteins were identified, including 45 up-regulated and three down-regulated proteins. Combined transcriptomic and proteomic studies have shown that the main enrichment pathway is the hedgehog signaling pathway. Western blot results showed that the expression levels of Sonic hedgehog (SHH) (P
- Published
- 2024
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