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Start Over You searched for: Topic biological system modeling Remove constraint Topic: biological system modeling Journal ieee/acm transactions on computational biology & bioinformatics Remove constraint Journal: ieee/acm transactions on computational biology & bioinformatics
232 results

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1. Model Order and Identifiability of Non-Linear Biological Systems in Stable Oscillation.

2. The Detection of Self-Similar/Branching Processes in Complex Biological Systems: Analysis of the Temporal Evolution of Impedance Measurements in Tulsi (Holy Basil) Leaves “Ocimumtenuiflorum”.

3. Document-Level Chemical-Induced Disease Relation Extraction via Hierarchical Representation Learning.

4. EMS3: An Improved Algorithm for Finding Edit-Distance Based Motifs.

5. An Ensemble of U-Net Models for Kidney Tumor Segmentation With CT Images.

6. MD-MLI: Prediction of miRNA–lncRNA Interaction by Using Multiple Features and Hierarchical Deep Learning.

7. Generation of Level-$k$k LGT Networks.

8. Linear Time Reconciliation With Bounded Transfers of Genes.

9. Relation Extraction From Biomedical and Clinical Text: Unified Multitask Learning Framework.

10. POPBic: Pathway-Based Order Preserving Biclustering Algorithm Towards the Analysis of Gene Expression Data.

11. The Impact of Self-Loops on Boolean Networks Attractor Landscape and Implications for Cell Differentiation Modelling.

12. LitMC-BERT: Transformer-Based Multi-Label Classification of Biomedical Literature With An Application on COVID-19 Literature Curation.

13. A Multimodal Framework for Improving in Silico Drug Repositioning With the Prior Knowledge From Knowledge Graphs.

14. Predictive Modeling of Hospital Readmission: Challenges and Solutions.

15. Basins of Attraction, Commitment Sets, and Phenotypes of Boolean Networks.

16. Two New Heuristic Methods for Protein Model Quality Assessment.

17. On Attractor Detection and Optimal Control of Deterministic Generalized Asynchronous Random Boolean Networks.

18. Pattern Discovery in Multilayer Networks.

19. Optimal Robust Search for Parameter Values of Qualitative Models of Gene Regulatory Networks.

20. A New Algorithm for Counting Independent Motifs in Probabilistic Networks.

21. Switched Latent Force Models for Reverse-Engineering Transcriptional Regulation in Gene Expression Data.

22. Deep Learning in Drug Design: Protein-Ligand Binding Affinity Prediction.

23. Analysis of Pattern Formation by Colored Petri Nets With Quantitative Regulation of Gene Expression Level.

24. Multi-Neighborhood Learning for Global Alignment in Biological Networks.

25. Floating Search Methodology for Combining Classification Models for Site Recognition in DNA Sequences.

26. Optimising Boolean Synthetic Regulatory Networks to Control Cell States.

27. Reconciliation Reconsidered: In Search of a Most Representative Reconciliation in the Duplication-Transfer-Loss Model.

28. Sorting Signed Permutations by Inverse Tandem Duplication Random Losses.

29. Towards Optimal Decomposition of Boolean Networks.

30. A Mutation Model from First Principles of the Genetic Code.

31. Exploring Molecular Descriptors and Fingerprints to Predict mTOR Kinase Inhibitors using Machine Learning Techniques.

32. A Novel Cox Proportional Hazards Model for High-Dimensional Genomic Data in Cancer Prognosis.

34. A Property-Driven Methodology for Formal Analysis of Synthetic Biology Systems.

35. Reviving the Two-State Markov Chain Approach.

36. Reduction of Qualitative Models of Biological Networks for Transient Dynamics Analysis.

37. Aggregation for Computing Multi-Modal Stationary Distributions in 1-D Gene Regulatory Networks.

38. A New Efficient Algorithm for the Frequent Gene Team Problem.

39. A Review on Methods for Detecting SNP Interactions in High-Dimensional Genomic Data.

40. Soft Ngram Representation and Modeling for Protein Remote Homology Detection.

41. GrantExtractor: Accurate Grant Support Information Extraction from Biomedical Fulltext Based on Bi-LSTM-CRF.

42. LSTM-Based End-to-End Framework for Biomedical Event Extraction.

43. MPGM: Scalable and Accurate Multiple Network Alignment.

44. Global Biological Network Alignment by Using Efficient Memetic Algorithm.

45. Boolean Networks with Multiexpressions and Parameters.

46. Deep Robust Framework for Protein Function Prediction Using Variable-Length Protein Sequences.

47. Bayesian Data Fusion of Gene Expression and Histone Modification Profiles for Inference of Gene Regulatory Network.

48. Assessing the Effectiveness of Causality Inference Methods for Gene Regulatory Networks.

49. A Multi-Laplacian Prior and Augmented Lagrangian Approach to the Exploratory Analysis of Time-Varying Gene and Transcriptional Regulatory Networks for Gene Microarray Data.

50. Extraction of Blebs in Human Embryonic Stem Cell Videos.