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As the performance gap between processors and storage devices keeps increasing, I/O performance becomes a critical bottleneck of modern high-performance computing systems. In this paper, we propose a pattern-directed and layout-aware data replication design, named PDLA, to improve the performance of parallel I/O systems. PDLA includes an HDD-based scheme H-PDLA and an SSD-based scheme S-PDLA . For applications with relatively low I/O concurrency, H-PDLA identifies access patterns of applications and makes a reorganized data replica for each access pattern on HDD-based servers with an optimized data layout. Moreover, to accommodate applications with high I/O concurrency, S-PDLA replicates critical access patterns that can bring performance benefits on SSD-based servers or on HDD-based and SSD-based servers. We have implemented the proposed replication scheme under MPICH2 library on top of OrangeFS file system. Experimental results show that H-PDLA can significantly improve the original parallel I/O system performance and demonstrate the advantages of S-PDLA over H-PDLA.

As data volumes of high-performance computing applications continuously increase, low I/O performance becomes a fatal bottleneck of these data-intensive applications. Data replication is a promising approach to improve parallel I/O performance. However, most existing strategies are designed based on the assumption that contiguous requests are being served more efficiently than non-contiguous requests, which is not necessarily true in a parallel I/O system. The reason is that the multiple-server data distribution makes the favorable accesses between contiguous requests and non-contiguous ones indeterminate. In this study, we propose CEDA, a cost-effective distribution-aware data replication scheme to better support parallel I/O systems. As logical file access information is inefficient to make replication decisions in a parallel environment, CEDA considers physical data accesses on servers in both data selection and data placement during a parallel replication process. Specifically, CEDA first proposes a distribution-aware cost model to evaluate the file request time with a given data layout, and then it carries out cost-effective data replication based on replication benefit analysis. We have implemented CEDA as a part of the MPI I/O library in light of high portability on top of the OrangeFS file system. By replaying representative benchmarks and a real application, we collected comprehensive experimental results on both HDD- and SSD-based servers and conclude that CEDA can significantly improve parallel I/O system performance.

Parallel file system (PFS) is commonly used in high-end computing systems. With the emergence of solid state drives (SSDs), hybrid PFS, which consists of both HDD and SSD servers, provides a practical I/O system solution for data-intensive applications. However, most existing data layout schemes are inefficient for hybrid PFS due to their unawareness of server heterogeneities and workload changes in different parts of a file. In this study, we propose a heterogeneity-aware region-level data layout scheme, HARL, to improve the data distribution of a hybrid PFS. HARL first divides a file into fine-grained, varying sized regions according to the workload features of an application, then determines appropriate file stripe sizes on servers for each region based on the performance of heterogeneous servers. Furthermore, to further improve the performance of a hybrid PFS, we propose a dynamic region-level layout scheme, HARL-D, which creates multiple replicas for each region and redirects file requests to the proper replicas with the lowest access costs at the runtime. Experimental results of representative benchmarks and a real application show that HARL can greatly improve I/O system performance, and demonstrate the advantages of HARL-D over HARL.

Collective I/O is a widely used middleware technique that exploits I/O access correlation among multiple processes to improve I/O system performance. However, most existing implementations of collective I/O strategies are designed and optimized for homogeneous I/O systems. In practice, the homogeneity assumptions do not hold in heterogeneous parallel I/O systems, which consist of multiple HDD and SSD-based servers and become increasingly promising. In this paper, we propose a heterogeneity-aware collective-I/O (HACIO) strategy to enhance the performance of conventional collective I/O operations. HACIO reorganizes the order of I/O requests for each aggregator with awareness of the storage performance of heterogeneous servers, so that the hardware of the systems can be better utilized. We have implemented HACIO in ROMIO, a widely used MPI-IO library. Experimental results show that HACIO can significantly increase the I/O throughputs of heterogeneous I/O systems.

Due to the infamous “memory wall” problem and a drastic increase in the number of data intensive applications, memory rather than processors has become the leading performance bottleneck in modern computing systems. Evaluating and understanding memory system performance is increasingly becoming the core of high-end computing. Conventional memory metrics, such as miss ratio, AMAT, etc., are designed to measure a given memory performance parameter, and do not reflect the overall performance or complexity of a modern memory system. On the other hand, widely used system-performance metrics, such as IPC, are designed to measure CPU performance, and do not directly reflect memory performance. In this paper, we propose a novel memory metric called Access Per Cycle (APC), which is the number of data accesses per cycle, to measure the overall memory performance with respect to the complexity of modern memory systems. A unique contribution of APC is its separation of memory evaluation from CPU evaluation; therefore, it provides a quantitative measurement of the “data-intensiveness” of an application. Simulation results show that the memory performance measured by APC captures the concurrency complexity of modern memory systems, while other metrics cannot. APC is simple, effective, and is significantly more appropriate than existing memory metrics in evaluating modern memory systems.

In a dynamic environment where a process can migrate from one host to another host, communication state transfer is a key issue of process coordination. We present a set of data communication and process migration protocols to support communication state transfer in a dynamic, distributed parallel environment. The protocols preserve the semantics of point-to-point communication; they guarantee message delivery, maintain message ordering, and do not introduce deadlock when blocking send or receive operations are performed during process migration. Analytical proofs and prototype implementation are conducted to confirm the correctness of the protocols. Analytical and experimental results show the proposed design is valid and has a true potential in network computing.

The low cost and wide availability of networks of workstations have made them an attractive solution for high performance computing. However, while a network of workstations may be readily available, these workstations may be privately owned and the owners may not want others to interrupt their priority in using the computer. Assuming machine owners have a preemptive priority, in this paper, we study the parallel processing capacity of a privately owned network of workstations. A mathematical model is developed to predict performance for nondedicated network computing. It also considers systems with heterogeneous machine utilization and heterogeneous service distribution. This model separates the influence of machine utilization, sequential job service rate, and parallel task allocation on the parallel completion time. It is simple and valuable for guiding task scheduling in a nondedicated environment.

Three parallel algorithms, namely, the parallel partition LU (PPT) algorithm, the parallel partition hybrid (PPH) algorithm, and the parallel diagonal dominant (PDD) algorithm, are proposed for solving tridiagonal linear systems on multicomputers. These algorithms are based on the divide-and-conquer parallel computation model. The PPT and PPH algorithms support both pivoting and nonpivoting. The PPT algorithm is good when the number of processors is small; otherwise, the PPH algorithm is better. When the system is diagonal dominant, the PDD algorithm is highly parallel and provides an approximate solution which equals the exact solution within machine accuracy. Computation and communication complexities of the three algorithms are presented. All three methods have been implemented on a 64-node nCUBE-1 multicomputer. The analytic results closely match the results measured from the nCUBE-1 machine. >