1. Ultra-Fast Computation of Excited-States Spectra for Large Systems: Ultraviolet and Fluorescence Spectra of Proteins
- Author
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Zhongyuan Lu, Hang Zhang, Jianjie Xu, Zeren Li, Qiangqiang Liu, Qiao Liu, Li Han, Yunfan Yang, Yonggang Liu, and Tengxiao Guo
- Subjects
0303 health sciences ,Materials science ,Computation ,030302 biochemistry & molecular biology ,Excitation spectra ,Health Informatics ,medicine.disease_cause ,Fluorescence spectra ,Fluorescence ,Molecular physics ,General Biochemistry, Genetics and Molecular Biology ,Spectral line ,Computer Science Applications ,03 medical and health sciences ,Excited state ,medicine ,Ultra fast ,Ultraviolet ,030304 developmental biology - Abstract
A workable approach named xTB-sTDDFT was selected to investigate the excited-state spectra of oxytocin (135 atoms), GHRP-6 (120 atoms) and insulin (793 atoms). Three different Hartree–Fock components functionals (wB97XD3: 51%, LC-BLYP: 53%, wB97X: 57%) were used to calculate the excitation spectra, and the results calculated by wB97XD3 functional well agree with the experiments. It’s a deep impression that computed time cost reduced by more than 80%. For polypeptide (oxytocin and GHRP-6), both UV and fluorescence spectra were obtained, and the errors between the calculated and experimental values approximately were 20 nm. For Insulin, the errors are within 15 nm. UV spectrum peak is λcal = 262 nm (λexp = 277 nm, Δλ = 15 nm), and fluorescence spectrum peak is λcal = 294 nm (λexp = 304 nm, Δλ = 10 nm). In summary, a suitable theoretical model is established to ultra-fast calculate the electronic excitation spectra of large systems, such as proteins and biomacromolecules, with good calculation accuracy, fast calculation speed and low cost.
- Published
- 2020
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