1. Identification of essential tryptophan in amylomaltase from Corynebacterium glutamicum
- Author
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Santhana Nakapong, Wachiraporn Naumthong, Kuakarun Krusong, Piamsook Pongsawasdi, Wanitcha Rachadech, and Pitchanan Nimpiboon
- Subjects
Models, Molecular ,Stereochemistry ,Molecular Conformation ,medicine.disease_cause ,Biochemistry ,Catalysis ,Corynebacterium glutamicum ,Structural Biology ,Catalytic Domain ,medicine ,Site-directed mutagenesis ,Molecular Biology ,Escherichia coli ,Protein secondary structure ,Alanine ,Binding Sites ,biology ,Chemistry ,Circular Dichroism ,Hydrolysis ,Tryptophan ,Active site ,Glycogen Debranching Enzyme System ,General Medicine ,Enzyme assay ,Recombinant Proteins ,Enzyme Activation ,Mutation ,biology.protein ,Protein Binding - Abstract
This work aims to identify essential tryptophan residue(s) of amylomaltase from Corynebacterium glutamicum ( Cg AM) through chemical modification and site-directed mutagenesis techniques. The recombinant enzyme expressed by Escherichia coli was purified and treated with N -bromosuccinimide (NBS), a modifying agent for tryptophan. A significant decrease in enzyme activity was observed indicating that tryptophan is important for catalysis. Inactivation kinetics with NBS resulted in pseudo first-order rate constant ( k inact ) of 2.31 min −1 . Substrate protection experiment confirmed the active site localization of the NBS-modified tryptophan residue(s) in Cg AM. Site-directed mutagenesis was performed on W330, W425 and W673 to localize essential tryptophan residues. Substitution by alanine resulted in the loss of intra- and intermolecular transglucosylation activities for all mutated Cg AMs. Analysis of circular dichroism spectra showed no change in the secondary structure of W425A but a significant change for W330A and W673A from that of the WT. From these results in combination with X-ray structural data and interpretation from the binding interactions in the active site region, W425 was confirmed to be essential for catalytic activity of Cg AM. The hydrophobicity of this tryptophan was thought to be critical for substrate binding and supporting catalytic action of the three carboxylate residues at the active site.
- Published
- 2014