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Summary With the characteristics of high efficiency and high power density, the four switch buck–boost (FSBB) converter is widely used in electric vehicles, direct current microgrids, and so forth. However, how to achieve smooth switching between different modes of FSBB has always been a hot issue in the theoretical and engineering fields. In this paper, considering the dynamic performance and output voltage or inductance current deviation, a control algorithm with integrated natural trajectory method is designed to realize the switching of different modes of FSBB converter. The proposed control algorithm is based on the theory of large signal natural locus and average natural locus. The normalized phase locus of inductance current and output voltage divides the phase plane into five regions and performs large signal or average switching operations in different regions. Theoretical analysis shows that the proposed control algorithm can achieve the balance between the dynamic performance and output voltage or inductance current deviation of FSBB converter in different mode switching. Finally, the performance of the proposed control algorithm is verified by experiments results. [ABSTRACT FROM AUTHOR]