1. Subcellular Localization Signals of bHLH-PAS Proteins: Their Significance, Current State of Knowledge and Future Perspectives
- Author
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Marta Kolonko and Beata Greb-Markiewicz
- Subjects
Nuclear Localization Signals ,Intracellular Space ,CLOCK ,Review ,BMAL ,lcsh:Chemistry ,Basic Helix-Loop-Helix Transcription Factors ,lcsh:QH301-705.5 ,Spectroscopy ,General Medicine ,SIM ,Protein subcellular localization prediction ,Computer Science Applications ,Cell biology ,ARNT ,Protein Transport ,Multigene Family ,MET ,Signal Transduction ,Signal peptide ,bHLH-PAS ,In silico ,NLS ,Biology ,NPAS ,SIMA ,Catalysis ,Inorganic Chemistry ,Structure-Activity Relationship ,Animals ,Humans ,HIF ,Protein Interaction Domains and Motifs ,CYCLE ,Physical and Theoretical Chemistry ,Nuclear export signal ,Molecular Biology ,Transcription factor ,GCE ,Organic Chemistry ,Subcellular localization ,TANGO ,Gene Expression Regulation ,lcsh:Biology (General) ,lcsh:QD1-999 ,NES ,Carrier Proteins ,Nuclear localization sequence ,nucleocytoplasmic shuttling - Abstract
The bHLH-PAS (basic helix-loop-helix/ Period-ARNT-Single minded) proteins are a family of transcriptional regulators commonly occurring in living organisms. bHLH-PAS members act as intracellular and extracellular “signals” sensors, initiating response to endo- and exogenous signals, including toxins, redox potential, and light. The activity of these proteins as transcription factors depends on nucleocytoplasmic shuttling: the signal received in the cytoplasm has to be transduced, via translocation, to the nucleus. It leads to the activation of transcription of particular genes and determines the cell response to different stimuli. In this review, we aim to present the current state of knowledge concerning signals that affect shuttling of bHLH-PAS transcription factors. We summarize experimentally verified and published nuclear localization signals/nuclear export signals (NLSs/NESs) in the context of performed in silico predictions. We have used most of the available NLS/NES predictors. Importantly, all our results confirm the existence of a complex system responsible for protein localization regulation that involves many localization signals, which activity has to be precisely controlled. We conclude that the current stage of knowledge in this area is still not complete and for most of bHLH-PAS proteins an experimental verification of the activity of further NLS/NES is needed.
- Published
- 2019