3 results on '"Bernd Grosche"'
Search Results
2. Big data in radiation biology and epidemiology; an overview of the historical and contemporary landscape of data and biomaterial archives
- Author
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Bernd Grosche, Paul N. Schofield, Ulrike Kulka, Soile Tapio, Schofield, Paul N [0000-0002-5111-7263], Kulka, Ulrike [0000-0002-7734-3162], Tapio, Soile [0000-0001-9860-3683], and Apollo - University of Cambridge Repository
- Subjects
Big Data ,Engineering ,Radiobiology ,Epidemiology ,data sharing ,education ,External beam radiation ,Big data ,Tissue Banks ,History, 21st Century ,030218 nuclear medicine & medical imaging ,03 medical and health sciences ,0302 clinical medicine ,Occupational Exposure ,11. Sustainability ,Animals ,Humans ,Radiology, Nuclear Medicine and imaging ,Radiation Injuries ,biorepository ,database ,Radiological and Ultrasound Technology ,Ecology ,business.industry ,Archives ,Information Dissemination ,Reproducibility of Results ,History, 20th Century ,Data science ,Data sharing ,Biorepository ,13. Climate action ,030220 oncology & carcinogenesis ,business - Abstract
Over the past 60 years a great number of very large datasets have been generated from the experimental exposure of animals to external radiation and internal contamination. This accumulation of 'big data' has been matched by increasingly large epidemiological studies from accidental and occupational radiation exposure, and from plants, humans and other animals affected by environmental contamination. We review the creation, sustainability and reuse of this legacy data, and discuss the importance of Open data and biomaterial archives for contemporary radiobiological sciences, radioecology and epidemiology. We find evidence for the ongoing utility of legacy datasets and biological materials, but that the availability of these resources depends on uncoordinated, often institutional, initiatives to curate and archive them. The importance of open data from contemporary experiments and studies is also very clear, and yet there are few stable platforms for their preservation, sharing, and reuse. We discuss the development of the ERA and STORE data sharing platforms for the scientific community, and their contribution to FAIR sharing of data. The contribution of funding agency and journal policies to the support of data sharing is critical for the maximum utilisation and reproducibility of publicly funded research, but this needs to be matched by training in data management and cultural changes in the attitudes of investigators to ensure the sustainability of the data and biomaterial commons.
- Published
- 2019
3. Progress in updating the European Radiobiology Archives
- Author
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Paul N. Schofield, Michael Gruenberger, S. Saigusa, Laurence Fiette, C. R. Watson, S. Tapio, J. L. B. Bard, Bernd Grosche, M. Birschwilks, Björn Rozell, Michael J. Atkinson, G. Gerber, Pierre Dubus, M. Warren, Harmen Bijwaard, L. Quintanilla-Martinez, and C. Adelmann
- Subjects
Structure (mathematical logic) ,Internet ,Information retrieval ,Databases, Factual ,Radiological and Ultrasound Technology ,Archives ,business.industry ,Mouse Anatomy ,Radiobiology ,Ontology (information science) ,Bioinformatics ,Europe ,User-Computer Interface ,Experimental animal ,Radiology Information Systems ,Information resource ,Terminology as Topic ,Animals ,Humans ,Medicine ,Radiology, Nuclear Medicine and imaging ,Data input ,Medical diagnosis ,business ,Legacy database - Abstract
Purpose: The European Radiobiology Archives (ERA), together with corresponding Japanese and American databases, hold data from nearly all experimental animal radiation biology studies carried out between 1960 and 1998, involving more than 300,000 animals. The Federal Office for Radiation Protection, together with the University of Cambridge have undertaken to transfer the existing ERA archive to a web-based database to maximize its usefulness to the scientific community and bring data coding and structure of this legacy database into congruence with currently accepted semantic standards for anatomy and pathology. Methods: The accuracy of the primary data input was assessed and improved. The original rodent pathology nomenclature was recoded to replace the local ‘DIS-ROD’ (Disease Rodent) formalism with Mouse Pathology (MPATH) and Mouse Anatomy (MA) ontology terms. A pathology panel sampled histopathological slide material and compared the original diagnoses with currently accepted diagnostic criteria. Results: The overall non-systematic error rate varied among the studies between 0.26% and 4.41%, the mean error being 1.71%. The errors found have been corrected and the studies thus controlled have been annotated. The majority of the original pathology terms have been successfully translated into a combination of MPATH and MA ontology terms. Conclusions: ERA has the potential of becoming a world-wide radiobiological research tool for numerous applications, such as the re-analysis of existing data with new approaches in the light of new hypotheses and techniques, and using the database as an information resource for planning future animal studies. When the database is opened for new data it may be possible to offer long-term storage of data from recent and future animal studies.
- Published
- 2008
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