1. Paucibacter sediminis sp. nov., isolated from sediment in a freshwater pond.
- Author
-
Jung JY, Lee MH, Nam YH, Kang HK, Jeon JH, Kim JS, and Kim EJ
- Subjects
- Republic of Korea, Nucleic Acid Hybridization, Fatty Acids analysis, RNA, Ribosomal, 16S genetics, Geologic Sediments microbiology, Phylogeny, Ponds microbiology, DNA, Bacterial genetics, Base Composition, Bacterial Typing Techniques, Ubiquinone, Sequence Analysis, DNA
- Abstract
A Gram-stain-negative, aerobic, oxidase-positive, weakly catalase-positive, motile by means of a single polar flagellum, rod-shaped bacterium designated as strain S2-9
T was isolated from sediment sampled in Wiyang pond, Republic of Korea. Growth of this strain was observed at 10-40 °C (optimum, 35 °C) and pH 5.5-9.5 (optimum, pH 7.0-8.0) and in the presence of 0-0.5 % NaCl in Reasoner's 2A broth. The major fatty acids (>10 %) of strain S2-9T were C16 : 0 and summed feature 3 (comprising a mixture of C16 : 1 ω 7 c and/or C16 : 1 ω 6 c ). Ubiquinone-8 was detected as the respiratory quinone. The major polar lipids were phosphatidylethanolamine and phosphatidylglycerol. Strain S2-9T showed the highest 16S rRNA gene sequence similarity to Paucibacter oligotrophus ' CR182 (98.4 %), all type strains ofT (98.7 %), followed by ' Paucibacter aquatile ' CR182 (98.4 %), all type strains of Pelomonas species (98.1-98.3 %), Mitsuaria chitosanitabida NBRC 102408T (97.9 %), Kinneretia asaccharophila KIN192T (97.8 %), Mitsuaria chitinivorans HWN-4T (97.4 %), and Paucibacter toxinivorans 2C20T (97.4 %). Phylogenetic trees based on the 16S rRNA gene and whole-genome sequences showed that strain S2-9T formed a tight phylogenetic lineage with Paucibacter species (CHU3T , CR182, and 2C20T strains were 76.6-79.3% and 19.5-21.5 %, respectively. The genomic DNA G+C content of strain S2-9T was 68.3 mol%. Notably, genes responsible for both sulphur oxidation and reduction and denitrification were found in the genome of strain S2-9 Paucibacter strains were 76.6-79.3% and 19.5-21.5 %, respectively. The genomic DNA G+C content of strain S2-9T was 68.3 mol%. Notably, genes responsible for both sulphur oxidation and reduction and denitrification were found in the genome of strain S2-9T represents a novel species of the genusT is involved in the nitrogen and sulphur cycles in pond ecosystems. Based on the polyphasic taxonomic results, strain S2-9T represents a novel species of the genus Paucibacter , for which the name Paucibacter sediminis sp. nov. is proposed. The type strain is S2-9T (= KACC 22267T = JCM 34541T ).- Published
- 2024
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