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Aim The aim of this paper is to investigate the influence and extent of past climatic changes on South American biota. To this end, we establish phylogeographical hypotheses for a monophyletic group of four cactophilic species of Drosophila (the Drosophila serido haplogroup) found in xeromorphic vegetation in Brazil. The effects of Quaternary palaeoclimatic oscillations on the demographic fluctuations of our biological model and its sister group Drosophila antonietae are investigated. Location Areas of eastern Brazil with open vegetation, including seasonally dry tropical forest ( SDTF) areas and montane savannas, which are disjunctly distributed in eastern Brazil. We also analysed populations of sand dune vegetation from littoral areas in Brazil. Methods Nucleotide information from 630 bp of the cytochrome c oxidase subunit I gene from 441 individuals was used to perform a series of statistical analyses to infer a phylogeographical hypothesis for each species and to date the divergence time between the D. serido and D. antonietae haplogroups. Results All of the analysed species experienced population expansion during the Pleistocene, probably following the historical migratory routes that have been proposed for the expansion of SDTFs in Brazil. A bottleneck event in the Holocene was inferred for Drosophila seriema, probably due to ecological factors related to the geographical distribution of the host plant. The divergence time for the D. serido and D. antonietae haplogroups was calculated to have occurred during the early Pleistocene. Main conclusions Geographical and chronological evidence suggests that the major vicariant events between the D. serido and D. antonietae haplogroups, as well as the demographic fluctuations in each of the species within these lineages, could be related to the causal effects of Quaternary palaeoclimatic changes on the spatial dynamics of the SDTFs in Brazil. [ABSTRACT FROM AUTHOR]

Summary This paper analyses the relationship between the distribution of tropical floodplain vegetation and environmental factors such as the soil types, their physical-chemical properties and inundation dynamics in the northern Pantanal of Mato Grosso, Brazil. Fifty-four soil profiles of the four principal geomorphologic units of the lowland were classified into twenty-one units of the FAO-UNESCO system and related to eight vegetation formations. Under the deciduous and semideciduous woodland and forest formations on flood free riverbanks and relict dunes Arenosols, Solonetz and Alisols dominate. Inundation forests grow on a large variety of soil groupings such as Alisols, Solonetz, Fluvisols, Gleysols and Cambisols, mainly on fluvial deposits. Under the grassland formations of periodically flooded spreadings and depressions Planosols, Acrisols, Alisols, Fluvisols, Arenosols and Cambisols were cored, while Gleysols are common on swamps bearing Thalia geniculata or Cyperus giganteus. Canonical Correspondence Analysis was applied to study the influence of monitored environmental factors on spatial distribution of vegetation formations. Water regime and soil texture were found to define the grassland-forest boundaries as well as the transition between different grassland formations and between seasonal as well as evergreen forests. [ABSTRACT FROM AUTHOR]

Most comparative studies of biological communities in different biogeographical regions highlight ecological convergence under matched environments. Here we use savanna ant communities as a striking example where such convergence has not occurred. The savanna ant faunas of Australia, Brazil and Africa have very different functional composition due to their highly contrasting evolutionary origins.We synthesise the literature relating to the diversity and composition of savanna ant communities in the three continents, along with ant community responses to fire and aridity.Australian savannas evolved in association with a desert biome and its fauna is strongly arid adapted: it is exceptionally thermophilic, granivorous species are extremely diverse and abundant, high diversity is maintained with increasing aridity, and communities are highly resilient to simplification of vegetation structure induced by frequent fire. Brazilian savannas evolved surrounded by rainforest and have a forest‐derived ant fauna; this fauna is not so highly thermophilic, granivory is almost absent, diversity declines with increasing aridity and communities are highly sensitive to fire‐induced vegetation change. Africa has a very generalised ant fauna that has moderate representations of highly thermophilic and granivorous species, diversity appears to decline with increasing aridity, but communities are highly resilient to fire.The different biogeographical histories of tropical savannas in Australia, Brazil and Africa have led to functionally distinct ant faunas that display contrasting responses to environmental stress and disturbance. Phylogenetic niche conservatism seems to be particularly strong for granivory and thermophilia. Such intercontinental differences have important implications for understanding biodiversity responses to land management and climate change. [ABSTRACT FROM AUTHOR]

Aim: Phylogenetic diversification is a precursor to speciation, but the underlying patterns and processes are not well‐studied in lichens. Here we investigate what factors drive diversification in two tropical, morphologically similar macrolichens that occupy a similar range but differ in altitudinal and habitat preferences, testing for isolation by distance (IBD), environment (IBE), and fragmentation (IBF). Location: Neotropics, Hawaii, Macaronesia. Taxon: Sticta andina, S. scabrosa (Peltigeraceae). Methods: We analysed 395 specimens from 135 localities, using the fungal ITS barcoding marker to assess phylogenetic diversification, through maximum likelihood tree reconstruction, TCS haplotype networks, and Tajima's D. Mantel tests were employed to detect structure in genetic vs. geographic, environmental, and fragmentation distances. Habitat preferences were quantitatively assessed by statistical analysis of locality‐based BIOclim variables. Results: Sticta andina exhibited high phenotypic variation and reticulate phylogenetic diversity across its range, whereas the phenotypically uniform S. scabrosa contained two main haplotypes, one unique to Hawaii. Sticta andina is restricted to well‐preserved andine forests and paramos, naturally fragmented habitats due to disruptive topology, whereas S. scabrosa thrives in lowland to lower montane zones in exposed or disturbed microsites, representing a continuous habitat. Sticta scabrosa showed IBD only across its full range (separating the Hawaiian population) but not within continental Central and South America, there exhibiting a negative Tajima's D. Sticta andina did not exhibit IBD but IBE at continental level and IBF in the northern Andes. Main conclusions: Autecology, particularly preference for either low or high altitudes, indirectly drives phylogenetic diversification. Low diversification in the low altitude species, S. scabrosa, can be attributed to rapid expansion and effective gene flow across a more or less continuous niche due to disturbance tolerance. In contract, high diversification in the high altitude species, S. andina, can be explained by niche differentiation (IBE) and fragmentation (IBF) caused by the Andean uplift. [ABSTRACT FROM AUTHOR]

Aim Spatial autocorrelation analysis of genetic diversity was combined with ecological niche modelling (ENM) to better infer how ecological and evolutionary processes underlie population structure in Eugenia dysenterica, a widely distributed tree in the 'Cerrado' region of Central Brazil. Location 'Cerrado' region, Central Brazil. Methods Data were derived from 11 microsatellite loci in 23 populations of E. dysenterica, totalling 249 allele frequencies. The expected heterozygosity (He) within populations and the first principal coordinates extracted from pairwise FST and from the difference between RST and FST among populations were correlated with shifts in suitability from ENM. Frequencies were then analysed using a spatial autocorrelation analysis based on Moran's I and Mantel tests to contrast population differentiation for mean allele frequencies, allele size and shifts in suitability since the Last Glacial Maximum inferred from ENM. Results Spatial correlograms based on Moran's I and Mantel tests showed a linear decrease in autocorrelation with distance, which revealed north-west-south-east gradients in allele frequencies, genetic diversity and differences between RST and FST. These spatial patterns varied among loci and alleles, and the strongest spatial patterns were found for more common alleles with higher levels of differentiation among populations and for those correlated with shifts in ENM suitability. Main conclusions Current genetic diversity and population structure in E. dysenterica can be explained by geographical range shifts associated with Quaternary climate dynamics, thus demonstrating the value of applying spatial analyses to study the ecological and evolutionary processes underlying differentiation even within populations possessing a continuous distribution. [ABSTRACT FROM AUTHOR]

Aim The aim of this study was to test the hypothesis that the Brazilian coastal populations of Hoplias malabaricus were subject to the same geomorphological and palaeohydrological factors that resulted in endemic fish regions, by characterizing the mitochondrial DNA, nuclear sequences and cytogenetic data of these populations. Location Seventeen coastal basins in north-eastern, eastern and south-eastern Brazil, plus the São Francisco Basin. Methods Forty-two specimens were analysed. Mitochondrial ATP synthase 6 ( ATPase-6) and nuclear recombination activating gene 2 ( RAG2) gene sequences were used for Bayesian inference and maximum parsimony analyses. Molecular models were selected using MrModeltest. Results Molecular analyses indicated four haplogroups (Northeastern, Eastern A, Eastern B and Southeastern) for ATPase-6 and three clades for RAG2. All topologies were congruent with Hoplias malabaricus diploid numbers, with most regions of proposed endemism and coastal geomorphological units. Main conclusions Deep genetic divergence between the Northeastern and the other haplogroups was interpreted as evidence of the vicariant effect of the Abrolhos Formation, which effectively isolates 2 n = 40 and 2 n = 42 coastal populations. To the south, the Cabo Frio Magmatic Lineament also isolates the Eastern and Southeastern 2 n = 42 populations. In the Northeastern haplogroup, stream piracy was probably involved in chronologically varied dispersal events between coastal and continental basins. All haplogroups also included haplotypes that dispersed in recent times. Results show an older vicariant pattern and recent dispersal events congruent with the occurrence of temporary connections along the coast caused by eustatic sea level variations and the occurrence of stream piracy involving either continental or coastal basins, and suggest these processes contributed to the current distribution patterns of Brazilian coastal freshwater fish. [ABSTRACT FROM AUTHOR]

Aim The diversity of reproductive modes among amphibians constitutes a striking example of how differences in the biology of species provide important explanations for species distribution patterns on a broad scale. We hypothesize that sites with a higher humidity level will support more modes of reproduction than drier sites and will consequently exhibit a higher phylogenetic diversity. Furthermore, if there is a gradient in the tolerance of reproductive modes to desiccation, there will be a nested pattern in the composition of reproductive modes among sites. Location Twenty-seven forest sites in the Brazilian Atlantic Forest. Methods Through a path analysis approach, we evaluated the direct and indirect effects of the humidity level on the number of reproductive modes, as well as the relative importance of both variables on amphibian phylogenetic diversity. A nestedness analysis was used to quantify the extent to which the compositions of both species and reproductive modes in drier sites correspond to subsets of those in sites with higher annual precipitation. Results We found that the reproductive modes present in drier sites are non-random subsets of those present in sites with higher humidity levels. Because reproductive modes are phylogenetically conserved among amphibians, sites with a greater number of reproductive modes supported greater phylogenetic diversity. Sites with high precipitation throughout the year provided suitable environmental conditions for a larger number of reproductive modes, whereas sites with low precipitation and typical seasonal climates supported only those reproductive modes specialized to resist desiccation. Main conclusions Our results show that humidity-related variables are key environmental factors related to both the richness of reproductive modes and phylogenetic diversity. Our results support the hypothesis that the higher phylogenetic diversity found in moister sites reflects differences in the tolerance to desiccation among different reproductive modes. Given that reproductive modes are associated with susceptibility to desiccation, their incorporation into explanatory models may trigger a significant advance in the understanding of the mechanisms regulating the species richness and composition of amphibian communities. [ABSTRACT FROM AUTHOR]

Aim Habitat loss and climate change are two major drivers of biological diversity. Here we quantify how deforestation has already changed, and how future climate scenarios may change, environmental conditions within the highly disturbed Atlantic forests of Brazil. We also examine how environmental conditions have been altered within the range of selected bird species. Location Atlantic forests of south-eastern Brazil. Methods The historical distribution of 21 bird species was estimated using Maxent. After superimposing the present-day forest cover, we examined the environmental niches hypothesized to be occupied by these birds pre- and post-deforestation using environmental niche factor analysis (ENFA). ENFA was also used to compare conditions in the entire Atlantic forest ecosystem pre- and post-deforestation. The relative influence of land use and climate change on environmental conditions was examined using analysis of similarity and principal components analysis. Results Deforestation in the region has resulted in a decrease in suitable habitat of between 78% and 93% for the Atlantic forest birds included here. Further, Atlantic forest birds today experience generally wetter and less seasonal forest environments than they did historically. Models of future environmental conditions within forest remnants suggest generally warmer conditions and lower annual variation in rainfall due to greater precipitation in the driest quarter of the year. We found that deforestation resulted in a greater divergence of environmental conditions within Atlantic forests than that predicted by climate change. Main conclusions The changes in environmental conditions that have occurred with large-scale deforestation suggest that selective regimes may have shifted and, as a consequence, spatial patterns of intra-specific variation in morphology, behaviour and genes have probably been altered. Although the observed shifts in available environmental conditions resulting from deforestation are greater than those predicted by climate change, the latter will result in novel environments that exceed temperatures in any present-day climates and may lead to biotic attrition unless organisms can adapt to these warmer conditions. Conserving intra-specific diversity over the long term will require considering both how changes in the recent past have influenced contemporary populations and the impact of future environmental change. [ABSTRACT FROM AUTHOR]

Aim We aim to propose validated, spatially explicit hypotheses for the late Quaternary distribution of the Brazilian Atlantic forest, and thereby provide a framework for integrating analyses of species and genetic diversity in the region. Location The Atlantic forest, stretching along the Brazilian coast. Methods We model the spatial range of the forest under three climatic scenarios (current climate, 6000 and 21,000 years ago) with BIOCLIM and MAXENT. Historically stable areas or refugia are identified as the set of grid cells for which forest presence is inferred in all models and time projections. To validate inferred refugia, we test whether our models are matched by the current distribution of the forest and by fossil pollen data. We then investigate whether the location of inferred forest refugia is consistent with current patterns of species endemism and existing phylogeographical data. Results Forest models agree with pollen records and predict a large area of historical forest stability in the central corridor (Bahia), as well as a smaller refuge (Pernambuco) along the Brazilian coast, matching current centres of endemism in multiple taxa and mtDNA diversity patterns in a subset of the species examined. Less historical stability is predicted in coastal areas south of the Doce river, which agrees with most phylogeographical studies in that region. Yet some widely distributed taxa show high endemism in the southern Atlantic forest. This may be due to limitations of the modelling approach, differences in ecology and dispersal capability, historical processes not contemplated by the current study or inadequacy of the available test data sets. Main conclusions Palaeoclimatic models predict the presence of historical forest refugia in the Atlantic rain forest and suggest spatial variation in persistence of forests through the Pleistocene, predicting patterns of biodiversity in several local taxa. The results point to the need for further studies to document genetic and species endemism in the relatively poorly known and highly impacted areas of Atlantic rain forests of north-eastern Brazil. [ABSTRACT FROM AUTHOR]

Aim This contribution treats the phytogeography of the contemporary campos de altitude flora, with a focus on patterns at the level of genus. Comparative analysis using data from 17 other sites in Latin America is used to describe phytogeographical patterns at the continental scale. Results are combined with those of previous publications to shed light on the biogeographical origins of contemporary floristic patterns in the high mountains of south-east Brazil. Location The campos de altitude are a series of cool-humid, mountaintop grass- and shrublands found above elevations of 1800–2000 m in south-east Brazil, within the biome of the Atlantic Forest. Methods Vascular floras are compiled for the three best-known campos de altitude sites, and for 17 other highland and lowland locations in Latin America. Floras are binned into phytogeographical groups based on centres of diversity/origin. Floristic and geographical distances are calculated for all location-pairs; Mantel tests are used to test for relationships between patterns in geographical distance, and floristic and climatic similarity. Multivariate statistics are carried out on the similarity matrices for all genera, and for each phytogeographical group. Predominant life-forms, pollination and dispersal syndromes are determined for each genus in the campos de altitude flora, and proportional comparisons are made between phytogeographical groups. Supporting evidence from previously published literature is used to interpret analytical results. Results Two-thirds of the genera in the campos de altitude are of tropical ancestry; the remainder are of temperate-zone or cosmopolitan ancestry. Most campos de altitude genera are phanerophytes and hemicryptophytes, insect pollinated, and wind or gravity dispersed, but there are significant differences in the distribution of these traits among phytogeographical groups. The campos de altitude show stronger floristic similarities with other Brazilian mountain sites and distant Andean sites than with nearby low- and middle-elevation sites; these similarities are best explained by climatic similarities. Floristic similarities among sites for temperate genera are better explained by ‘sinuous’ distance (e.g. measured along the spines of mountain ranges) than by direct distance; similarities in tropical genera are more related to direct distance. Different phytogeographical groups appear to be responding to different climatic signals. Main conclusions Many taxa currently living at the summits of the south-east Brazilian Highlands trace their ancestry to temperate latitudes. Patterns of endemism and diversity in the south-east Brazilian mountains point to climatically driven allopatry as a principal mechanism for speciation. The tropical component of the campos de altitude flora is primarily derived from drier, highland environments of the Brazilian interior; the temperate component rises in importance with elevation, but never reaches the levels seen in the tropical Andes. Most temperate taxa in the campos de altitude appear to have arrived via migration through favourable habitat rather than by recent, long-distance dispersal. At least 11% of the plant species in the campos de altitude study sites are directly shared with the Andes. Palynofloras show that the campos de altitude have significantly contracted over the past 10,000 years, as regional temperatures have warmed and become more humid. [ABSTRACT FROM AUTHOR]

Aim To present a fish fauna survey from rivers draining the south-western region of the Serra da Mantiqueira, and to investigate the effectiveness of that mountain range as a biogeographical barrier isolating the fish faunas of the Paraíba do Sul basin and the upper Paraná river. Location Six drainages from the south-western portion of the Serra da Mantiqueira in the region of Campos do Jordão, Brazil, were studied. They included three drainages belonging to the Paraíba do Sul basin (Piracuama, Grande and Buenos), and three belonging to the Sapucaí basin, Rio Paraná system (Sapucaí-Mirim, upper Sapucaí and Santo Antônio). Methods The survey was conducted in two sampling trips supplemented by examination of specimens preserved in museum collections. Parsimony analysis of endemicity (PAE) was used to detect the hierarchy of relationships among the six drainages. Results A total of 47 species of fishes was recorded in the six drainages. The main watershed divide is an effective barrier between the two basins, with 28 species occurring exclusively in the Paraíba do Sul versant, and 15 occurring exclusively on the slope of the Sapucaí basin. The PAE of 18 species with cladistically informative distributions and unproblematic taxonomic diagnoses produced a single area cladogram, with complete congruence among 14 species. Main conclusions The main Mantiqueira watershed divide is an effective biogeographical barrier isolating the fish faunas of the Paraíba do Sul and the Sapucaí basin (upper Paraná system). Previous hypotheses of a past connection between the upper Paraná and the Paraíba do Sul are not supported by extant species distributions in the Serra da Mantiqueira region. Within-basin drainage differentiation, however, is relatively low. [ABSTRACT FROM AUTHOR]

Aim To use parsimony analysis of endemicity and cladistic analysis of distributions and endemism to evaluate two hypotheses addressing biogeographical relationships among Amazonia, the Caatinga forest enclaves, Pernambuco Centre and the southern Atlantic Forest. Location North-eastern Brazil, South America. Methods To find the most parsimonious areagram we analysed a matrix composed of the presence (1) or absence (0) of 745 taxa (i.e. 293 genera and 452 species of woody plants) within 16 localities belonging to the four large regions addressed in this study. Results One most parsimonious areagram was found and it shows a basal separation between the southern Atlantic Forest and all other regions. This break is followed by a separation between all Caatinga forest enclaves (except Baturité) from a cluster composed of Baturité, the Pernambuco Centre and Amazonia. In this cluster, the most basal separation isolates Baturité from the cluster formed by localities from Amazonia and the Pernambuco Centre. The biogeographical relationships among sites could not be explained by either a random distribution of species among sites or by the geographical distance between sites. Main conclusions We found strong cladistic signal within the raw distribution and phylogenetic data used in our analysis, indicating structured species assemblages in the surveyed localities. They have resulted from the fragmentation of an ancestral biota that was once widely distributed in the region. Our results also support the hypothesis that Atlantic Forest is not a biogeographically natural area, because the Pernambuco Centre is more closely related to Amazonia than to the southern Atlantic Forest. Finally, our data do not support the notion that Caatinga forest enclaves comprise a single biogeographical region, because one Caatinga forest enclave (Baturité) is much more closely related to the cluster formed by Amazonia and the Pernambuco Centre than to other sites. These relationships suggest the occurrence of forest connections between Amazonia and the Atlantic Forests across Caatinga during several periods of the Tertiary and Quaternary. However, palaeoecological data currently available for the Caatinga region are still scarce and do not have either the spatial or temporal resolution required to reconstruct the history of connections among the forests in north-eastern Brazil. [ABSTRACT FROM AUTHOR]

Aim To determine if the distributions of lizard species from Seasonally Dry Tropical Forest (SDTF) enclaves within the Cerrado biome in central Brazil are associated with the Tropical Seasonal Forests Region, a recently proposed phytogeographic unit of South America, corroborating the existence of a Pleistocenic Arc of SDTFs. Location SDTF remnants in the Paranã River valley, municipality of São Domingos, Goiás, Brazil. Methods Lizards were extensively sampled using haphazard sampling, funnel traps, and pitfall traps with drift fences during four expeditions. The composition of the SDTF lizard assemblage was compared with those from other South American phytogeographic regions (Caatinga, Cerrado, Chaco, Llanos, and the dry forests of Colombia and Bolivia), based on the literature and our own unpublished data. Results The SDTF lizard assemblage contained 20 species, including 11 species with extensive distributions among the regions considered, seven species shared exclusively with Cerrado localities, a single species shared exclusively with other SDTFs, and one endemic species. The presence of Lygodactylus klugei (Smith, Martin & Swain, 1977), presumably endemic to the Pleistocenic Arc formed by the Tropical Seasonal Forests Region, considerably extends the known distribution of this species, suggesting historical connections between Caatinga and Cerrado SDTF enclaves. Main conclusions The composition of the lizard assemblage in Cerrado SDTF enclaves seems to corroborate the recent proposal that the SDTF should be recognized as a phytogeographic unit (or dominium). The presence of disjunct populations and endemic species highlights the urgency of considering the uniqueness of the Paranã River valley SDTFs and the importance of its conservation. [ABSTRACT FROM AUTHOR]

Aim Tropical savanna ecosystems are uniquely characterized by the co-dominance of both trees and grasses. An operational understanding of the ecological processes involved in maintaining this condition is essential for understanding both the functioning of savanna systems as well as their potential response to environmental change. A simple model is presented to explore the potential for a demographic mechanism of long-term tree persistence and temporal physiognomic stability in the Brazilian cerrado. Location The model is developed based on data from the humid cerrado of Brazil. Methods In contrast to many existing models of tree–grass dynamics a model is presented which is based on data from the humid cerrado of Brazil, which is both qualitatively and quantitatively different from many of the more arid savannas of the palaeotropics. The model focuses on the dynamics of a synthetic tree population, with particular attention given to reproduction, seedling establishment and fire effects; with separate sub-models for grass production, fire and rainfall. Results The model successfully predicts coexistence across the full range of observed vegetation physiognomies, but only under limited conditions. Under coexistence conditions, the dynamics of the tree population are characterized by long periods of gradual decline, punctuated by occasional bursts of growth. However, in agreement with earlier studies, the model consistently over-predicts domination by the tree component. Fire is identified as an overriding factor in determining model behaviour, and the response of reproduction and sapling recruitment to variance in the frequency of fire ignition is identified to be of potential importance in the functioning of the Brazilian cerrado. The key dynamics of the model which promote tree–grass coexistence are consistent with a number of established determinants of ecological resilience in savanna systems. Main conclusions The model identifies the importance of the effective exploitation of rare opportunities for favourable recruitment (e.g. exclusion from fire) by the tree population, in promoting coexistence within a predominantly adverse environment. Support is provided for an alternative demographic mechanism of tree–grass coexistence in the cerrado (the storage effect), which is not based on the limiting assumption of niche partitioning through differences in rooting depth. The results are consistent with those presented by recent modelling work based on the more arid savannas of southern Africa. The model presented here differs in the emphasis given to particular environmental and life-history attributes which are critical in determining the tree–grass balance, but provides further general support for the potential role of demographic mechanisms (such as the storage effect) in determining the structure of tropical savannas. Despite having clear limitations, models can serve as valuable heuristic tools to aid the integration and exploration of existing data sets as well as our present understanding of key ecological processes. [ABSTRACT FROM AUTHOR]

Aim The Brazilian Atlantic forest covers c. 10% of its original extent, and some areas are still being logged. Although several ecological studies in Atlantic forest have been published over the past two to three decades, there has been little research on forest dynamics and there is a particular lack of information on the effects of disturbance. The aim of the present study was to assess the impact of selective logging on forest structure, floristic composition soil nutrients, litterfall and litter layer in a seasonally dry Atlantic forest . Location The Mata do Carvão is located in the Guaxindiba Ecological Reserve in São Francisco do ltabapoana district (21°24′ S, 41°04′ W), Rio de Janeiro, Brazil. Methods Four plots (50 × 50 m) were set up in 1995 in each of two stands: unlogged and logged. In each plot, all trees ≥ 10 cm d.b.h. were enumerated, identified and measured. Vouchers were lodged at UENF Herbarium. Five surface soil samples were collected in each plot in the dry season (in October 1995). Litterfall was collected in eight traps (0.50 m2) in each plot over a year from 14 November 1995 to 11 November 1996. The litter layer was sampled in eight quadrats (0.25 m2) in each plot in the dry and wet seasons. Soils were air-dried, sieved, and chemically analysed. The litter was dried (80 °C), sorted into six fractions, weighed and bulked samples analysed for nutrients. Results Forest stands did not differ in stem density and total basal area, with a total of 1137 individuals sampled in 1996 (564 unlogged and 573 logged), and a total basal area of 15 m2 (unlogged) and 13.0 m2 (logged). However, unlogged stands had more large trees (≥ 30 cm in d.b.h.) and greater mean canopy height. Among the families, Rutaceae and Leguminosae were the most abundant families in both sites, although the Rutaceae had a higher density in unlogged and Leguminosae in the logged stand. The species diversity index was similar between stands. Late-successional species, such as Metrodorea nigra var. brevifolia and Paratecoma peroba, were less abundant in the logged stand. Selective logging did not affect nutrient concentrations in the soil or in the litter. However, quantities of the nutrients in the total litterfall and in the leaf litterfall and litter layer were higher in unlogged than in logged stands, mainly as a result of fallen M. nigra leaves. Metrodorea nigra was considered a key species in the nutrients dynamics in Carvão forest. Main conclusions Despite the fact that effects on tree diversity and soil nutrients were not clear, selective logging in this Atlantic forest altered canopy structure, increased the relative abundance of some early-secondary species and decreased the litter input and stock of nutrients. Detailed information on the influence of logging on the distribution and structure of plant populations and in nutrient processes is fundamental for a sustainable logging system to be developed. [ABSTRACT FROM AUTHOR]