30 results on '"Philip V"'
Search Results
2. Effect of Direction and Frequency of Skull Motion on Mechanical Vulnerability of the Human Brain.
- Author
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Okamoto, Ruth J., Escarcega, Jordan D., Alshareef, Ahmed, Carass, Aaron, Prince, Jerry L., Johnson, Curtis L., and Bayly, Philip V.
- Published
- 2023
- Full Text
- View/download PDF
3. A new method to measure cortical growth in the developing brain
- Author
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Knutsen, Andrew K., Chang, Yulin V., Grimm, Cindy M., Phan, Ly, Taber, Larry A., and Bayly, Philip V.
- Subjects
Brain -- Properties ,Cerebral cortex -- Properties ,Mensuration -- Methods ,Mensuration -- Technology application ,Magnetic resonance imaging -- Methods ,Technology application ,Engineering and manufacturing industries ,Science and technology - Abstract
Folding of the cerebral cortex is a critical phase of brain development in higher mammals but the biomechanics of folding remain incompletely understood. During folding, the growth of the cortical surface is heterogeneous and anisotropic. We developed and applied a new technique to measure spatial and directional variations in surface growth from longitudinal magnetic resonance imaging (MRI) studies of a single animal or human subject. MRI provides high resolution 3D image volumes of the brain at different stages of development. Surface representations of the cerebral cortex are obtained by segmentation of these volumes. Estimation of local surface growth between two times requires establishment of a point-to-point correspondence ('registration') between surfaces measured at those times. Here we present a novel approach for the registration of two surfaces in which an energy function is minimized by solving a partial differential equation on a spherical surface. The energy function includes a strain-energy term due to distortion and an 'error energy' term due to mismatch between surface features. This algorithm, implemented with the finite element method, brings surface features into approximate alignment while minimizing deformation in regions without explicit matching criteria. The method was validated by application to three simulated test cases and applied to characterize growth of the ferret cortex during folding. Cortical surfaces were created from MRI data acquired in vivo at 14 days, 21 days, and 28 days of life. Deformation gradient and Lagrangian strain tensors describe the kinematics of growth over this interval. These quantitative results illuminate the spatial, temporal, and directional patterns of growth during cortical folding. [DOI: 10.1115/1.4002430] Keywords: brain development, registration, MRI
- Published
- 2010
4. Axons pull on the brain, but tension does not drive cortical folding
- Author
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Xu, Gang, Knutsen, Andrew K., Dikranian, Krikor, Kroenke, Christopher D., Bayly, Philip V., and Taber, Larry A.
- Subjects
Biomechanics -- Research ,Brain -- Physiological aspects ,Finite element method -- Usage ,Engineering and manufacturing industries ,Science and technology - Abstract
During human brain development, the cerebral cortex undergoes substantial folding, leading to its characteristic highly convoluted form. Folding is necessary to accommodate the expansion of the cerebral cortex; abnormal cortical folding is linked to various neurological disorders, including schizophrenia, epilepsy, autism, and mental retardation. Although this process requires mechanical forces, the specific force-generating mechanisms that drive folding remain unclear. The two most widely accepted hypotheses are as follows: (1) Folding is caused by differential growth of the cortex and (2) folding is caused by mechanical tension generated in axons. Direct evidence supporting either theory, however, is lacking. Here we show that axons are indeed under considerable tension in the developing ferret brain, but the patterns of tissue stress are not consistent with a causal role for axonal tension. In particular, microdissection assays reveal that significant tension exists along axons aligned circumferentially in subcortical white matter tracts, as well as those aligned radially inside developing gyri (outward folds). Contrary to previous speculation, however, axonal tension is not directed across developing gyri, suggesting that axon tension does not drive folding. On the other hand, using computational (finite element) models, we show that differential cortical growth accompanied by remodeling of the subplate leads to outward folds and stress fields that are consistent with our microdissection experiments, supporting a mechanism involving differential growth. Local perturbations, such as temporal differences in the initiation of cortical growth, can ensure consistent folding patterns. This study shows that a combination of experimental and computational mechanics can be used to evaluate competing hypotheses of morphogenesis, and illuminate the biomechanics of cortical folding. [DOI: 10.1115/1.4001683] Keywords: biomechanics, morphogenesis, differential growth, finite element model, diffusion tensor imaging
- Published
- 2010
5. Opening angles and material properties of the early embryonic chick brain
- Author
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Xu, Gang, Kemp, Philip S., Hwu, Joyce A., Beagley, Adam M., Bayly, Philip V., and Taber, Larry A.
- Subjects
Biomechanics -- Research ,Brain -- Structure ,Neurosciences -- Research ,Engineering and manufacturing industries ,Science and technology - Abstract
Mechanical forces play an important role during brain development. In the early embryo, the anterior end of the neural tube enlarges and differentiates into the major brain subdivisions, including three expanding vesicles (forebrain, midbrain, and hindbrain) separated by two constrictions. Once the anterior neuropore and the spinal neurocoel occlude, the brain tube undergoes further regional growth and expansion in response to increasing cerebrospinal fluid pressure. Although this is known to be a response to mechanical loads, the mechanical properties of the developing brain remain largely unknown. In this work, we measured regional opening angles (due to residual stress) and stiffness of the embryonic chick brain during Hamburger-Hamilton stages 11-13 (approximately 42-51 h incubation). Opening angles resulting from a radial cut on transverse brain slices were about 40-110 deg (depending on region and stage) and served as an indicator of circumferential residual stress. In addition, using a custom-made micro-indentation device and finite-element models, we determined regional indentation stiffness and material properties. The results indicate that the modulus is relatively independent of position and stage of development with the average shear modulus being about 220 Pa for stages 11-13 chick brains. Information on the regional material properties of the early embryonic brain will help illuminate the process of early brain morphogenesis. [DOI: 10.1115/1.4000169] Keywords: biomechanics, morphogenesis, microindentation, residual stress, neuroepithelium
- Published
- 2010
6. A new method for measuring deformation of folding surfaces during morphogenesis
- Author
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Filas, Benjamen A., Knutsen, Andrew K., Bayly, Philip V., and Taber, Larry A.
- Subjects
Biomechanics -- Research ,Brain -- Growth ,Heart -- Growth ,Morphogenesis -- Evaluation ,Company growth ,Engineering and manufacturing industries ,Science and technology - Abstract
During morphogenesis, epithelia (cell sheets) undergo complex deformations as they stretch, bend, and twist to form the embryo. Often these changes in shape create multi-valued surfaces that can be problematic for strain measurements. This paper presents a method for quantifying deformation of such surfaces. The method requires four-dimensional spatiotemporal coordinates of a finite number of surface markers, acquired using standard imaging techniques. From the coordinates of the markers, various deformation measures are computed as functions of time and space using straightforward matrix algebra. This method accommodates sparse randomly scattered marker arrays, with reasonable errors in marker locations. The accuracy of the method is examined for some sample problems with exact solutions. Then, the utility of the method is illustrated by using it to measure surface stretch ratios and shear in the looping heart and developing brain of the early chick embryo. In these examples, microspheres are tracked using optical coherence tomography. This technique provides a new tool that can be used in studies of the mechanics of morphogenesis. [DOI: 10.1115/1.2979866] Keywords: strain, heart development, brain development, biomechanics
- Published
- 2008
7. Inelastic behavior in repeated shearing of bovine white matter
- Author
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Cohen, Taylor S., Smith, Andrew W., Massouros, Panagiotis G., Bayly, Philip V., Shen, Amy Q., and Genin, Guy M.
- Subjects
Animal mechanics -- Research ,Brain -- Properties ,Elasticity -- Measurement ,Cattle -- Physiological aspects ,Engineering and manufacturing industries ,Science and technology - Abstract
Understanding the brain's response to multiple loadings requires knowledge of how straining changes the mechanical response of brain tissue. We studied the inelastic behavior of bovine white matter and found that when this tissue is stretched beyond a critical strain threshold, its reloading stiffness drops. An upper bound for this strain threshold was characterized, and was found to be strain rate dependent at low strain rates and strain rate independent at higher strain rates. Results suggest that permanent changes to tissue mechanics can occur at strains below those believed to cause physiological disruption or rupture of axons. Such behavior is characteristic of disentanglement in fibrousnetworked solids, in which strain-induced mechanical changes may result from fiber realignment rather than fiber breakage. [DOI: 10.1115/1.2939290] Keywords: brain tissue mechanics, inelastic straining
- Published
- 2008
8. Constrained tibial vibration in mice: a method for studying the effects of vibrational loading of bone
- Author
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Christiansen, Blaine A., Bayly, Philip V., and Silva, Matthew J.
- Subjects
Vibration -- Evaluation ,Osteoporosis -- Risk factors ,Osteoporosis -- Physiological aspects ,Tibia -- Properties ,Engineering and manufacturing industries ,Science and technology - Abstract
Vibrational loading can stimulate the formation of new trabecular bone or maintain bone mass. Studies investigating vibrational loading have often used whole-body vibration (WBV) as their loading method. However, WBV has limitations in small animal studies because transmissibility of vibration is dependent on posture. In this study, we propose constrained tibial vibration (CTV) as an experimental method for vibrational loading of mice under controlled conditions. In CTV, the lower leg of an anesthetized mouse is subjected to vertical vibrational loading while supporting a mass. The setup approximates a one degree-of-freedom vibrational system. Accelerometers were used to measure transmissibility of vibration through the lower leg in CTV at frequencies from 20 Hz to 150 Hz. First, the frequency response of transmissibility was quantified in vivo, and dissections were performed to remove one component of the mouse leg (the knee joint, foot, or soft tissue) to investigate the contribution of each component to the frequency response of the intact leg. Next, a finite element (FE) model of a mouse tibia-fibula was used to estimate the deformation of the bone during CTV. Finally, strain gages were used to determine the dependence of bone strain on loading frequency. The in vivo mouse leg in the CTV system had a resonant frequency of 60 Hz for [+ or -]0.5 G vibration (1.0 G peak to peak). Removing the foot caused the natural frequency of the system to shift from 60 Hz to 70 Hz, removing the soft tissue caused no change in natural frequency, and removing the knee changed the natural frequency from 60 Hz to 90 Hz. By using the FE model, maximum tensile and compressive strains during CTV were estimated to be on the cranial-medial and caudolateral surfaces of the tibia, respectively, and the peak transmissibility and peak cortical strain occurred at the same frequency. Strain gage data confirmed the relationship between peak transmissibility and peak bone strain indicated by the FE model, and showed that the maximum cyclic tibial strain during CTV of the intact leg was 330[+ or -]82tze and occurred at 60-70 Hz. This study presents a comprehensive mechanical analysis of CTV, a loading method for studying vibrational loading under controlled conditions. This model will be used in future in vivo studies and will potentially become an important tool for understanding the response of bone to vibrational loading. [DOI: 10.1115/1.2917435] Keywords: vibration, osteoporosis, transmissibility, WBV
- Published
- 2008
9. Measurement of the dynamic shear modulus of mouse brain tissue in Vivo by magnetic resonance elastography
- Author
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Atay, Stefan M., Kroenke, Christopher D., Sabet, Arash, and Bayly, Philip V.
- Subjects
Finite element method -- Usage ,Brain -- Properties ,Elasticity -- Measurement ,Shear (Mechanics) -- Measurement ,Magnetic resonance imaging -- Methods ,Engineering and manufacturing industries ,Science and technology - Abstract
In this study, the magnetic resonance (MR) elastography technique was used to estimate the dynamic shear modulus of mouse brain tissue in vivo. The technique allows visualization and measurement of mechanical shear waves excited by lateral vibration of the skull. Quantitative measurements of displacement in three dimensions during vibration at 1200 Hz were obtained by applying oscillatory magnetic field gradients at the same frequency during a MR imaging sequence. Contrast in the resulting phase images of the mouse brain is proportional to displacement. To obtain estimates of shear modulus, measured displacement fields were fitted to the shear wave equation. Validation of the procedure was performed on gel characterized by independent rheometry tests and on data from finite element simulations. Brain tissue is, in reality, viscoelastic and nonlinear. The current estimates of dynamic shear modulus are strictly relevant only to small oscillations at a specific frequency, but these estimates may be obtained at high frequencies (and thus high deformation rates), noninvasively throughout the brain. These data complement measurements of nonlinear viscoelastic properties obtained by others at slower rates, either ex vivo or invasively. [DOI: 10.1115/1.2899575] Keywords: elastography, MRL brain, stiffness
- Published
- 2008
10. Multi-Excitation Magnetic Resonance Elastography of the Brain: Wave Propagation in Anisotropic White Matter
- Author
-
Curtis L. Johnson, Ruth J. Okamoto, Daniel R. Smith, Charlotte A. Guertler, Philip V. Bayly, and Anthony J. Romano
- Subjects
Physics ,Wave propagation ,Biomedical Engineering ,Brain ,Vibration ,Research Papers ,030218 nuclear medicine & medical imaging ,Magnetic resonance elastography ,Computational physics ,White matter ,Shear modulus ,03 medical and health sciences ,0302 clinical medicine ,medicine.anatomical_structure ,Transverse isotropy ,Physiology (medical) ,medicine ,Elasticity Imaging Techniques ,Anisotropy ,030217 neurology & neurosurgery ,Excitation - Abstract
Magnetic resonance elastography (MRE) has emerged as a sensitive imaging technique capable of providing a quantitative understanding of neural microstructural integrity. However, a reliable method for the quantification of the anisotropic mechanical properties of human white matter is currently lacking, despite the potential to illuminate the pathophysiology behind neurological disorders and traumatic brain injury. In this study, we examine the use of multiple excitations in MRE to generate wave displacement data sufficient for anisotropic inversion in white matter. We show the presence of multiple unique waves from each excitation which we combine to solve for parameters of an incompressible, transversely isotropic (ITI) material: shear modulus, [Formula: see text] , shear anisotropy, [Formula: see text] , and tensile anisotropy, [Formula: see text]. We calculate these anisotropic parameters in the corpus callosum body and find the mean values as [Formula: see text] = 3.78 kPa, [Formula: see text] = 0.151, and [Formula: see text] = 0.099 (at 50 Hz vibration frequency). This study demonstrates that multi-excitation MRE provides displacement data sufficient for the evaluation of the anisotropic properties of white matter.
- Published
- 2020
- Full Text
- View/download PDF
11. Estimation of Anisotropic Material Properties of Soft Tissue by MRI of Ultrasound-Induced Shear Waves
- Author
-
Charlotte A. Guertler, Christopher Pham Pacia, Jake A Ireland, Joel R. Garbow, Philip V. Bayly, Hong Chen, and Ruth J. Okamoto
- Subjects
Shear waves ,Materials science ,Finite Element Analysis ,Physics::Medical Physics ,Biomedical Engineering ,01 natural sciences ,030218 nuclear medicine & medical imaging ,Shear modulus ,03 medical and health sciences ,0302 clinical medicine ,Transverse isotropy ,Physiology (medical) ,0103 physical sciences ,medicine ,Anisotropy ,010301 acoustics ,medicine.diagnostic_test ,Linear elasticity ,Mechanics ,Polarization (waves) ,Research Papers ,Elasticity ,Magnetic resonance elastography ,Elasticity Imaging Techniques ,Elastography - Abstract
This paper describes a new method for estimating anisotropic mechanical properties of fibrous soft tissue by imaging shear waves induced by focused ultrasound (FUS) and analyzing their direction-dependent speeds. Fibrous materials with a single, dominant fiber direction may exhibit anisotropy in both shear and tensile moduli, reflecting differences in the response of the material when loads are applied in different directions. The speeds of shear waves in such materials depend on the propagation and polarization directions of the waves relative to the dominant fiber direction. In this study, shear waves were induced in muscle tissue (chicken breast) ex vivo by harmonically oscillating the amplitude of an ultrasound beam focused in a cylindrical tissue sample. The orientation of the fiber direction relative to the excitation direction was varied by rotating the sample. Magnetic resonance elastography (MRE) was used to visualize and measure the full 3D displacement field due to the ultrasound-induced shear waves. The phase gradient (PG) of radially propagating “slow” and “fast” shear waves provided local estimates of their respective wave speeds and directions. The equations for the speeds of these waves in an incompressible, transversely isotropic (TI), linear elastic material were fitted to measurements to estimate the shear and tensile moduli of the material. The combination of focused ultrasound and MR imaging allows noninvasive, but comprehensive, characterization of anisotropic soft tissue.
- Published
- 2020
- Full Text
- View/download PDF
12. Multi-Excitation Magnetic Resonance Elastography of the Brain: Wave Propagation in Anisotropic White Matter
- Author
-
Smith, Daniel R., primary, Guertler, Charlotte A., primary, Okamoto, Ruth J., primary, Romano, Anthony J., primary, Bayly, Philip V., primary, and Johnson, Curtis L., primary
- Published
- 2020
- Full Text
- View/download PDF
13. Estimation of Anisotropic Material Properties of Soft Tissue by MRI of Ultrasound-Induced Shear Waves
- Author
-
Guertler, Charlotte A., primary, Okamoto, Ruth J., additional, Ireland, Jake A., additional, Pacia, Christopher P., additional, Garbow, Joel R., additional, Chen, Hong, additional, and Bayly, Philip V., additional
- Published
- 2020
- Full Text
- View/download PDF
14. Shear Wave Propagation and Estimation of Material Parameters in a Nonlinear, Fibrous Material
- Author
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Hou, Zuoxian, primary, Okamoto, Ruth J., additional, and Bayly, Philip V., additional
- Published
- 2020
- Full Text
- View/download PDF
15. Statistical Characterization of Human Brain Deformation During Mild Angular Acceleration Measured In Vivo by Tagged Magnetic Resonance Imaging
- Author
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Elizabeth Magrath, Dzung L. Pham, Deva D. Chan, Yuan-Chiao Lu, John A. Butman, Andrew K. Knutsen, Philip V. Bayly, Wen-Tung Wang, and Sarah H. Yang
- Subjects
Adult ,Male ,Angular acceleration ,Rotation ,Traumatic brain injury ,0206 medical engineering ,Population ,Acceleration ,Biomedical Engineering ,Posterior parietal cortex ,02 engineering and technology ,Biology ,White matter ,03 medical and health sciences ,0302 clinical medicine ,Physiology (medical) ,medicine ,Image Processing, Computer-Assisted ,Humans ,education ,Temporal cortex ,education.field_of_study ,medicine.diagnostic_test ,Brain ,Magnetic resonance imaging ,Human brain ,Anatomy ,medicine.disease ,020601 biomedical engineering ,Magnetic Resonance Imaging ,Research Papers ,Healthy Volunteers ,medicine.anatomical_structure ,Female ,Stress, Mechanical ,030217 neurology & neurosurgery - Abstract
Understanding of in vivo brain biomechanical behavior is critical in the study of traumatic brain injury (TBI) mechanisms and prevention. Using tagged magnetic resonance imaging, we measured spatiotemporal brain deformations in 34 healthy human volunteers under mild angular accelerations of the head. Two-dimensional (2D) Lagrangian strains were examined throughout the brain in each subject. Strain metrics peaked shortly after contact with a padded stop, corresponding to the inertial response of the brain after head deceleration. Maximum shear strain of at least 3% was experienced at peak deformation by an area fraction (median±standard error) of 23.5±1.8% of cortical gray matter, 15.9±1.4% of white matter, and 4.0±1.5% of deep gray matter. Cortical gray matter strains were greater in the temporal cortex on the side of the initial contact with the padded stop and also in the contralateral temporal, frontal, and parietal cortex. These tissue-level deformations from a population of healthy volunteers provide the first in vivo measurements of full-volume brain deformation in response to known kinematics. Although strains differed in different tissue type and cortical lobes, no significant differences between male and female head accelerations or strain metrics were found. These cumulative results highlight important kinematic features of the brain's mechanical response and can be used to facilitate the evaluation of computational simulations of TBI.
- Published
- 2017
16. Shear Wave Propagation and Estimation of Material Parameters in a Nonlinear, Fibrous Material.
- Author
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Zuoxian Hou, Okamoto, Ruth J., and Bayly, Philip V.
- Published
- 2020
- Full Text
- View/download PDF
17. Statistical Characterization of Human Brain Deformation During Mild Angular Acceleration Measured In Vivo by Tagged Magnetic Resonance Imaging
- Author
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Chan, Deva D., primary, Knutsen, Andrew K., additional, Lu, Yuan-Chiao, additional, Yang, Sarah H., additional, Magrath, Elizabeth, additional, Wang, Wen-Tung, additional, Bayly, Philip V., additional, Butman, John A., additional, and Pham, Dzung L., additional
- Published
- 2018
- Full Text
- View/download PDF
18. The Relationship of Three-Dimensional Human Skull Motion to Brain Tissue Deformation in Magnetic Resonance Elastography Studies
- Author
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Badachhape, Andrew A., primary, Okamoto, Ruth J., additional, Durham, Ramona S., additional, Efron, Brent D., additional, Nadell, Sam J., additional, Johnson, Curtis L., additional, and Bayly, Philip V., additional
- Published
- 2017
- Full Text
- View/download PDF
19. Measurement of Strain in Physical Models of Brain Injury: A Method Based on HARP Analysis of Tagged Magnetic Resonance Images (MRI)
- Author
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S. Ji, Ruth J. Okamoto, Panagiotis G. Massouros, Philip V. Bayly, Sheng-Kwei Song, and Guy M. Genin
- Subjects
Angular acceleration ,Biomedical Engineering ,Models, Biological ,Article ,Displacement (vector) ,Rats, Sprague-Dawley ,Nuclear magnetic resonance ,Physical Stimulation ,Physiology (medical) ,Indentation ,Image Interpretation, Computer-Assisted ,medicine ,Animals ,Humans ,Computer Simulation ,HARP ,Physics ,Deformation (mechanics) ,medicine.diagnostic_test ,Phantoms, Imaging ,Magnetic resonance imaging ,Elasticity (physics) ,Magnetic Resonance Imaging ,Elasticity ,Rats ,Brain Injuries ,Line (geometry) ,Algorithms ,Biomedical engineering - Abstract
The utility of harmonic phase (HARP) analysis has recently been demonstrated in humans and large animals as a technique for rapid and automatic analysis of tagged MR images. In the current study, the applicability and accuracy of HARP analysis for automatic strain quantification in small animals were investigated. A validation study was performed on seven post-infarct rats and seven age-matched controls. A method for direct computation of 2D Lagrangian strain fields from spatial derivatives of HARP images was also developed in this paper. The results of HARP analysis were evaluated by comparison with those of homogeneous strain analysis employing finite element method and manual tag tracking. Both methods were validated with simulated digital images. Compared to conventional homogeneous strain analysis, HARP analysis yielded similar results in the assessment of regional strain patterns in both control and infarct rats. Both methods detected a reduction in maximal stretch and shortening in infarct rats. Our results suggest that HARP analysis can also be applied to quantify alterations in regional myocardial wall motion in small animals.
- Published
- 2004
- Full Text
- View/download PDF
20. Mechanical Properties of Viscoelastic Media by Local Frequency Estimation of Divergence-Free Wave Fields
- Author
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Ruth J. Okamoto, E. H. Clayton, and Philip V. Bayly
- Subjects
Physics ,Shear waves ,Viscosity ,Wave propagation ,Isotropy ,Biomedical Engineering ,Reproducibility of Results ,Mechanics ,Research Papers ,Elasticity ,Viscoelasticity ,Magnetic resonance elastography ,Shear modulus ,Classical mechanics ,Transverse isotropy ,Physiology (medical) ,Image Processing, Computer-Assisted ,Anisotropy ,Elasticity Imaging Techniques ,Longitudinal wave - Abstract
Magnetic resonance elastography (MRE) is an imaging modality with which mechanical properties can be noninvasively measured in living tissue. Magnetic resonance elastography relies on the fact that the elastic shear modulus determines the phase velocity and, hence the wavelength, of shear waves which are visualized by motion-sensitive MR imaging. Local frequency estimation (LFE) has been used to extract the local wavenumber from displacement wave fields recorded by MRE. LFE -based inversion is attractive because it allows material parameters to be estimated without explicitly invoking the equations governing wave propagation, thus obviating the need to numerically compute the Laplacian. Nevertheless, studies using LFE have not explicitly addressed three important issues: (1) tissue viscoelasticity; (2) the effects of longitudinal waves and rigid body motion on estimates of shear modulus; and (3) mechanical anisotropy. In the current study we extend the LFE technique to (1) estimate the (complex) viscoelastic shear modulus in lossy media; (2) eliminate the effects of longitudinal waves and rigid body motion; and (3) determine two distinct shear moduli in anisotropic media. The extended LFE approach is demonstrated by analyzing experimental data from a previously-characterized, isotropic, viscoelastic, gelatin phantom and simulated data from a computer model of anisotropic (transversely isotropic) soft material.
- Published
- 2013
- Full Text
- View/download PDF
21. A new method to measure cortical growth in the developing brain
- Author
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Ly Phan, Philip V. Bayly, Larry A. Taber, Cindy Grimm, Yulin V. Chang, and Andrew K. Knutsen
- Subjects
Surface (mathematics) ,Models, Anatomic ,Finite Element Analysis ,Models, Neurological ,Biomedical Engineering ,Image registration ,Article ,Imaging, Three-Dimensional ,Physiology (medical) ,Distortion ,Animals ,Humans ,Segmentation ,Body Patterning ,Physics ,Cerebral Cortex ,Quantitative Biology::Neurons and Cognition ,Ferrets ,Brain ,Folding (DSP implementation) ,Image segmentation ,Magnetic Resonance Imaging ,Finite element method ,Biomechanical Phenomena ,Animals, Newborn ,Finite strain theory ,Biological system ,Algorithms - Abstract
Folding of the cerebral cortex is a critical phase of brain development in higher mammals but the biomechanics of folding remain incompletely understood. During folding, the growth of the cortical surface is heterogeneous and anisotropic. We developed and applied a new technique to measure spatial and directional variations in surface growth from longitudinal magnetic resonance imaging (MRI) studies of a single animal or human subject. MRI provides high resolution 3D image volumes of the brain at different stages of development. Surface representations of the cerebral cortex are obtained by segmentation of these volumes. Estimation of local surface growth between two times requires establishment of a point-to-point correspondence (“registration”) between surfaces measured at those times. Here we present a novel approach for the registration of two surfaces in which an energy function is minimized by solving a partial differential equation on a spherical surface. The energy function includes a strain-energy term due to distortion and an “error energy” term due to mismatch between surface features. This algorithm, implemented with the finite element method, brings surface features into approximate alignment while minimizing deformation in regions without explicit matching criteria. The method was validated by application to three simulated test cases and applied to characterize growth of the ferret cortex during folding. Cortical surfaces were created from MRI data acquired in vivo at 14 days, 21 days, and 28 days of life. Deformation gradient and Lagrangian strain tensors describe the kinematics of growth over this interval. These quantitative results illuminate the spatial, temporal, and directional patterns of growth during cortical folding.
- Published
- 2010
22. Opening Angles and Material Properties of the Early Embryonic Chick Brain
- Author
-
Joyce A. Hwu, Adam M. Beagley, Larry A. Taber, Philip V. Bayly, Gang Xu, and Philip S. Kemp
- Subjects
Chemistry ,Models, Neurological ,Embryogenesis ,Central nervous system ,Biomedical Engineering ,Neural tube ,Brain ,Hindbrain ,Chick Embryo ,Anatomy ,Article ,Neuroepithelial cell ,medicine.anatomical_structure ,Elastic Modulus ,Physiology (medical) ,Forebrain ,medicine ,Animals ,Computer Simulation ,Stress, Mechanical ,Cerebrospinal fluid pressure ,Chickens ,Brain morphogenesis - Abstract
Mechanical forces play an important role during brain development. In the early embryo, the anterior end of the neural tube enlarges and differentiates into the major brain subdivisions, including three expanding vesicles (forebrain, midbrain, and hindbrain) separated by two constrictions. Once the anterior neuropore and the spinal neurocoel occlude, the brain tube undergoes further regional growth and expansion in response to increasing cerebrospinal fluid pressure. Although this is known to be a response to mechanical loads, the mechanical properties of the developing brain remain largely unknown. In this work, we measured regional opening angles (due to residual stress) and stiffness of the embryonic chick brain during Hamburger–Hamilton stages 11–13 (approximately 42–51 h incubation). Opening angles resulting from a radial cut on transverse brain slices were about 40–110 deg (depending on region and stage) and served as an indicator of circumferential residual stress. In addition, using a custom-made microindentation device and finite-element models, we determined regional indentation stiffness and material properties. The results indicate that the modulus is relatively independent of position and stage of development with the average shear modulus being about 220 Pa for stages 11–13 chick brains. Information on the regional material properties of the early embryonic brain will help illuminate the process of early brain morphogenesis.
- Published
- 2009
- Full Text
- View/download PDF
23. A New Method for Measuring Deformation of Folding Surfaces During Morphogenesis
- Author
-
Andrew K. Knutsen, Benjamen A. Filas, Larry A. Taber, and Philip V. Bayly
- Subjects
Engineering drawing ,Quantitative Biology::Tissues and Organs ,Biomedical Engineering ,Morphogenesis ,Chick Embryo ,Models, Biological ,Article ,Microsphere ,Elasticity Imaging Techniques ,Imaging, Three-Dimensional ,Optical coherence tomography ,Physiology (medical) ,medicine ,Animals ,Computer Simulation ,Twist ,Finite set ,Physics ,medicine.diagnostic_test ,Spacetime ,Brain ,Heart ,Shear (geology) ,Biological system ,Algorithms - Abstract
During morphogenesis, epithelia (cell sheets) undergo complex deformations as they stretch, bend, and twist to form the embryo. Often these changes in shape create multivalued surfaces that can be problematic for strain measurements. This paper presents a method for quantifying deformation of such surfaces. The method requires four-dimensional spatiotemporal coordinates of a finite number of surface markers, acquired using standard imaging techniques. From the coordinates of the markers, various deformation measures are computed as functions of time and space using straightforward matrix algebra. This method accommodates sparse randomly scattered marker arrays, with reasonable errors in marker locations. The accuracy of the method is examined for some sample problems with exact solutions. Then, the utility of the method is illustrated by using it to measure surface stretch ratios and shear in the looping heart and developing brain of the early chick embryo. In these examples, microspheres are tracked using optical coherence tomography. This technique provides a new tool that can be used in studies of the mechanics of morphogenesis.
- Published
- 2008
- Full Text
- View/download PDF
24. Constrained tibial vibration in mice: a method for studying the effects of vibrational loading of bone
- Author
-
Philip V. Bayly, Blaine A. Christiansen, and Matthew J. Silva
- Subjects
Male ,Frequency response ,Materials science ,Biomedical Engineering ,medicine.disease_cause ,Mechanotransduction, Cellular ,Models, Biological ,Vibration ,Article ,Weight-bearing ,Weight-Bearing ,Mice ,Physiology (medical) ,Physical Stimulation ,medicine ,Animals ,Computer Simulation ,Tibia ,Transmissibility (structural dynamics) ,Strain gauge ,business.industry ,Natural frequency ,Structural engineering ,Equipment Design ,Equipment Failure Analysis ,Mice, Inbred C57BL ,Deformation (engineering) ,business ,Biomedical engineering - Abstract
Vibrational loading can stimulate the formation of new trabecular bone or maintain bone mass. Studies investigating vibrational loading have often used whole-body vibration (WBV) as their loading method. However, WBV has limitations in small animal studies because transmissibility of vibration is dependent on posture. In this study, we propose constrained tibial vibration (CTV) as an experimental method for vibrational loading of mice under controlled conditions. In CTV, the lower leg of an anesthetized mouse is subjected to vertical vibrational loading while supporting a mass. The setup approximates a one degree-of-freedom vibrational system. Accelerometers were used to measure transmissibility of vibration through the lower leg in CTV at frequencies from 20 Hz to 150 Hz. First, the frequency response of transmissibility was quantified in vivo, and dissections were performed to remove one component of the mouse leg (the knee joint, foot, or soft tissue) to investigate the contribution of each component to the frequency response of the intact leg. Next, a finite element (FE) model of a mouse tibia-fibula was used to estimate the deformation of the bone during CTV. Finally, strain gages were used to determine the dependence of bone strain on loading frequency. The in vivo mouse leg in the CTV system had a resonant frequency of 60 Hz for +/-0.5 G vibration (1.0 G peak to peak). Removing the foot caused the natural frequency of the system to shift from 60 Hz to 70 Hz, removing the soft tissue caused no change in natural frequency, and removing the knee changed the natural frequency from 60 Hz to 90 Hz. By using the FE model, maximum tensile and compressive strains during CTV were estimated to be on the cranial-medial and caudolateral surfaces of the tibia, respectively, and the peak transmissibility and peak cortical strain occurred at the same frequency. Strain gage data confirmed the relationship between peak transmissibility and peak bone strain indicated by the FE model, and showed that the maximum cyclic tibial strain during CTV of the intact leg was 330+/-82microepsilon and occurred at 60-70 Hz. This study presents a comprehensive mechanical analysis of CTV, a loading method for studying vibrational loading under controlled conditions. This model will be used in future in vivo studies and will potentially become an important tool for understanding the response of bone to vibrational loading.
- Published
- 2008
25. Inelastic Behavior in Repeated Shearing of Bovine White Matter
- Author
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Philip V. Bayly, Panagiotis G. Massouros, Andrew W. Smith, Taylor S. Cohen, Amy Q. Shen, and Guy M. Genin
- Subjects
Materials science ,Biomedical Engineering ,In Vitro Techniques ,Plasticity ,Models, Biological ,Nerve Fibers, Myelinated ,Article ,White matter ,Physiology (medical) ,medicine ,Animals ,Computer Simulation ,Tissue mechanics ,Elasticity (economics) ,Fiber breakage ,Shearing (physics) ,business.industry ,Stiffness ,Structural engineering ,Strain rate ,Elasticity ,medicine.anatomical_structure ,Nonlinear Dynamics ,Biophysics ,Cattle ,Stress, Mechanical ,medicine.symptom ,Shear Strength ,business - Abstract
Understanding the brain’s response to multiple loadings requires knowledge of how straining changes the mechanical response of brain tissue. We studied the inelastic behavior of bovine white matter and found that when this tissue is stretched beyond a critical strain threshold, its reloading stiffness drops. An upper bound for this strain threshold was characterized, and was found to be strain rate dependent at low strain rates and strain rate independent at higher strain rates. Results suggest that permanent changes to tissue mechanics can occur at strains below those believed to cause physiological disruption or rupture of axons. Such behavior is characteristic of disentanglement in fibrous-networked solids, in which strain-induced mechanical changes may result from fiber realignment rather than fiber breakage.
- Published
- 2008
- Full Text
- View/download PDF
26. Measurement of the Dynamic Shear Modulus of Mouse Brain Tissue In Vivo by Magnetic Resonance Elastography
- Author
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Arash A. Sabet, Philip V. Bayly, Stefan M. Atay, and Christopher D. Kroenke
- Subjects
Shear waves ,Materials science ,Biomedical Engineering ,Vibration ,Article ,Viscoelasticity ,Shear modulus ,Mice ,Elasticity Imaging Techniques ,Nuclear magnetic resonance ,Physiology (medical) ,medicine ,Animals ,medicine.diagnostic_test ,Phantoms, Imaging ,Viscosity ,Skull ,Brain ,Stiffness ,Elasticity ,Magnetic resonance elastography ,Mice, Inbred C57BL ,Female ,Elastography ,medicine.symptom - Abstract
In this study, the magnetic resonance (MR) elastography technique was used to estimate the dynamic shear modulus of mouse brain tissue in vivo. The technique allows visualization and measurement of mechanical shear waves excited by lateral vibration of the skull. Quantitative measurements of displacement in three dimensions during vibration at 1200Hz were obtained by applying oscillatory magnetic field gradients at the same frequency during a MR imaging sequence. Contrast in the resulting phase images of the mouse brain is proportional to displacement. To obtain estimates of shear modulus, measured displacement fields were fitted to the shear wave equation. Validation of the procedure was performed on gel characterized by independent rheometry tests and on data from finite element simulations. Brain tissue is, in reality, viscoelastic and nonlinear. The current estimates of dynamic shear modulus are strictly relevant only to small oscillations at a specific frequency, but these estimates may be obtained at high frequencies (and thus high deformation rates), noninvasively throughout the brain. These data complement measurements of nonlinear viscoelastic properties obtained by others at slower rates, either ex vivo or invasively.
- Published
- 2008
- Full Text
- View/download PDF
27. Mechanical Properties of Viscoelastic Media by Local Frequency Estimation of Divergence-Free Wave Fields
- Author
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Clayton, Erik H., primary, Okamoto, Ruth J., additional, and Bayly, Philip V., additional
- Published
- 2013
- Full Text
- View/download PDF
28. Opening Angles and Material Properties of the Early Embryonic Chick Brain
- Author
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Xu, Gang, primary, Kemp, Philip S., additional, Hwu, Joyce A., additional, Beagley, Adam M., additional, Bayly, Philip V., additional, and Taber, Larry A., additional
- Published
- 2009
- Full Text
- View/download PDF
29. Axons Pull on the Brain, But Tension Does Not Drive Cortical Folding.
- Author
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Gang Xu, Knutsen, Andrew K., Dikranian, Krikor, Kroenke, Christopher D., Bayly, Philip V., and Taber, Larry A.
- Published
- 2010
- Full Text
- View/download PDF
30. Opening Angles and Material Properties of the Early Embryonic Chick Brain.
- Author
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Gang Xu, Kemp, Philip S., Hwu, Joyce A., Beagley, Adam M., Bayly, Philip V., and Taber, Larry A.
- Published
- 2010
- Full Text
- View/download PDF
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