1. Solid-state NMR analysis of membrane proteins and protein aggregates by proton detected spectroscopy
- Author
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Andrew J. Nieuwkoop, Deborah A. Berthold, Elliott J. Brea, Donghua H. Zhou, Luisel R. Lemkau, Lindsay J. Sperling, Gautam J. Shah, Ming Tang, Chad M. Rienstra, and Gemma Comellas
- Subjects
Proton ,Chemistry ,Chemical assignment ,Solid-state NMR ,Magic-angle spinning ,Proton detection ,Escherichia coli Proteins ,Protein Disulfide-Isomerases ,Analytical chemistry ,Membrane Proteins ,Protonation ,Protein aggregation ,Deuterium ,Biochemistry ,Article ,Crystallography ,Protein structure ,Bacterial Proteins ,Structural biology ,Solid-state nuclear magnetic resonance ,Membrane protein ,alpha-Synuclein ,Magic angle spinning ,Protons ,Nuclear Magnetic Resonance, Biomolecular ,Spectroscopy - Abstract
Solid-state NMR has emerged as an important tool for structural biology and chemistry, capable of solving atomic-resolution structures for proteins in membrane-bound and aggregated states. Proton detection methods have been recently realized under fast magic-angle spinning conditions, providing large sensitivity enhancements for efficient examination of uniformly labeled proteins. The first and often most challenging step of protein structure determination by NMR is the site-specific resonance assignment. Here we demonstrate resonance assignments based on high-sensitivity proton-detected three-dimensional experiments for samples of different physical states, including a fully-protonated small protein (GB1, 6 kDa), a deuterated microcrystalline protein (DsbA, 21 kDa), a membrane protein (DsbB, 20 kDa) prepared in a lipid environment, and the extended core of a fibrillar protein (α-synuclein, 14 kDa). In our implementation of these experiments, including CONH, CO(CA)NH, CANH, CA(CO)NH, CBCANH, and CBCA(CO)NH, dipolar-based polarization transfer methods have been chosen for optimal efficiency for relatively high protonation levels (full protonation or 100 % amide proton), fast magic-angle spinning conditions (40 kHz) and moderate proton decoupling power levels. Each H–N pair correlates exclusively to either intra- or inter-residue carbons, but not both, to maximize spectral resolution. Experiment time can be reduced by at least a factor of 10 by using proton detection in comparison to carbon detection. These high-sensitivity experiments are especially important for membrane proteins, which often have rather low expression yield. Proton-detection based experiments are expected to play an important role in accelerating protein structure elucidation by solid-state NMR with the improved sensitivity and resolution.
- Published
- 2012