1. Understanding the Binding Specificity of G-Protein Coupled Receptors toward G-Proteins and Arrestins: Application to the Dopamine Receptor Family
- Author
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Agostinho Lemos, Jose G. Almeida, André Melo, Rita Melo, Irina S. Moreira, M. Natália D. S. Cordeiro, António J Preto, Salete J. Baptista, Zeynep Kurkcuoglu, and Carlos A. V. Barreto
- Subjects
G protein ,Arrestins ,General Chemical Engineering ,Computational biology ,Library and Information Sciences ,01 natural sciences ,Receptors, Dopamine ,Receptors, G-Protein-Coupled ,GTP-Binding Proteins ,Dopamine receptor D2 ,0103 physical sciences ,Arrestin ,Humans ,Homology modeling ,Receptor ,Structural motif ,G protein-coupled receptor ,010304 chemical physics ,biology ,Chemistry ,General Chemistry ,0104 chemical sciences ,Computer Science Applications ,010404 medicinal & biomolecular chemistry ,Rhodopsin ,biology.protein ,Receptors, Adrenergic, beta-2 ,Signal Transduction - Abstract
G-Protein coupled receptors (GPCRs) are involved in a myriad of pathways key for human physiology through the formation of complexes with intracellular partners such as G-proteins and arrestins (Arrs). However, the structural and dynamical determinants of these complexes are still largely unknown. Herein, we developed a computational big-data pipeline that enables the structural characterization of GPCR complexes with no available structure. This pipeline was used to study a well-known group of catecholamine receptors, the human dopamine receptor (DXR) family and its complexes, producing novel insights into the physiological properties of these important drug targets. A detailed description of the protein interfaces of all members of the DXR family (D1R, D2R, D3R, D4R, and D5R) and the corresponding protein interfaces of their binding partners (Arrs: Arr2 and Arr3; G-proteins: Gi1, Gi2, Gi3, Go, Gob, Gq, Gslo, Gssh, Gt2, and Gz) was generated. To produce reliable structures of the DXR family in complex with either G-proteins or Arrs, we performed homology modeling using as templates the structures of the β2-adrenergic receptor (β2AR) bound to Gs, the rhodopsin bound to Gi, and the recently acquired neurotensin receptor-1 (NTSR1) and muscarinic 2 receptor (M2R) bound to arrestin (Arr). Among others, the work demonstrated that the three partner groups, Arrs and Gs- and Gi-proteins, are all structurally and dynamically distinct. Additionally, it was revealed the involvement of different structural motifs in G-protein selective coupling between D1- and D2-like receptors. Having constructed and analyzed 50 models involving DXR, this work represents an unprecedented large-scale analysis of GPCR-intracellular partner interface determinants. All data is available at www.moreiralab.com/resources/dxr.
- Published
- 2020