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The negatively charged nitrogen-vacancy defect center, (NV)–, in diamond has been investigated theoretically for its one- and two-photon absorption properties involving the first excited state with the 3A2→3E transition. Time-dependent density functional theory (TD-DFT), configuration interaction with single excitation (CIS), and complete active space self-consistent field (CASSCF) were employed in this investigation along with the 6-31G(d) basis set. Diamond lattice models containing 24–104 carbon atoms were constructed to imitate the local environment of the defect center. TD-DFT calculations in large molecular cluster models (with 85 or more carbon atoms) predicted the vertical excitation energy quite consistent with the experimental absorption maximum. CASSCF calculations were feasible only for small cluster models (less than 50 carbon atoms) but yielded one-photon absorption (OPA) and two-photon absorption (TPA) cross sections somewhat larger than the experimental values obtained with linearly polarized incident light [T.-L. Wee et al., J. Phys. Chem. A 111, 9379 (2007)]. CIS calculations in larger cluster models showed a systematic overestimation of the excitation energy while just slightly underestimated the OPA cross section and overestimated the TPA cross section. The agreements between calculations and measurements suggest that the computational approaches established in this work are applicable to explore the optical properties of related defect centers in diamond as well. [ABSTRACT FROM AUTHOR]

In studying ultrafast electron transfer from a dye molecule to a nanosized semiconductor particle, pump-probe experiments are commonly used. In this system the electron transfer (ET) rate is faster than vibrational relaxation so that the ET rate should be described by a single-level rate constant and the probing signal (often in the form of time-resolved spectra) contains the contribution from the dynamics of both population and coherence (i.e., wave packet). In this paper, we shall present the theoretical treatments for femtosecond time-resolved pump-probe experiment and the dynamics of population and coherence by the density matrix method, and the calculation of single-level ET rate constant involved in a pump-probe experiment. As an application, we show the theoretical results using parameters extracted from experiments on a specific dye/semiconductor system. [ABSTRACT FROM AUTHOR]

This paper describes a systematic study on the clathrate structure of H+(H2O)21 using tandem mass spectrometry, vibrational predissociation spectroscopy, Monte Carlo simulations, and density functional theory calculations. We produced H+(H2O)n from a continuous corona-discharged supersonic expansion and observed three anomalies simultaneously at the cluster temperature near 150 K, including (1) the peak at n=21 is more intense than its neighboring ions in the mass spectrum, (2) the size-dependent dissociation fractions show a distinct drop for the 21-mer, and (3) the infrared spectrum of H+(H2O)21 exhibits only a single feature at 3699 cm-1, corresponding to the free-OH stretching of three-coordinated water molecules. Interestingly, the anomalies appear or disappear together with cluster temperature, indicating close correlation of these three observations. The observations, together with Monte Carlo simulations and density functional theory calculations, corroborate the notion for the formation of a distorted pentagonal dodecahedral (512) cage with a H2O molecule in the cage and a H3O+ ion on the surface for this “magic number” water cluster ion. The dodecahedral cage melts at higher temperatures, as evidenced by the emergence of a free-OH stretching feature at 3717 cm-1 for the two-coordinated water in H+(H2O)21 produced in a warmer molecular beam. Extension of this study to larger clusters strongly suggests that the experimentally observed isomer of H+(H2O)28 is most likely to consist of a distorted protonated pentakaidecahedral (51263) cage enclosing two neutral water molecules. [ABSTRACT FROM AUTHOR]

Vibrational spectra of CO physisorbed onto well defined NaCl(100) surfaces were studied using a Fourier transform infrared interferometer. Structures of CO starting from the monolayer to multilayers were explored. At 31.5 K and a CO pressure of 1×10-6 mbar only the monolayer is formed. Polarization measurements confirm our earlier study that the monolayer CO molecules are aligned perpendicular to the NaCl(100) surface. Increasing the CO pressure to 7×10-6 mbar produces multilayer adsorption. The multilayer spectra closely resemble that of α-CO absorption previously reported. The near perfect match of crystal structures and lattice constants of α-CO and NaCl is reasoned to force the epitaxial growth of single crystal multilayers in our experiments. At 22 K the monolayer absorption is at 2155.01 cm-1 with a bandwidth (FWHH) of 0.26 cm-1. The two prominent features in the multilayer spectra at 22 K are assigned to the longitudinal optical (LO) mode at 2142.54 cm-1 and the transverse optical (TO) mode at 2138.51 cm-1. Their frequency separation is a consequence of the lowering of the cubic symmetry of the bulk α-CO crystal by the shape, in the form of thin slabs, of our multilayer samples. Their bandwidths depend on the thickness of the sample and are characterized by a bandwidth parameter of 0.25 cm-1 for the LO mode and 0.85 cm-1 for the TO mode. The relative absorbances of these modes depend on the polarization of the infrared radiation. Theoretical formalism to account for the band splitting and absorption profiles of the infrared absorption is reviewed and applied to our measurements. While many features of our data can be explained by the present theory, further work is required to account for all the experimental results. [ABSTRACT FROM AUTHOR]

This paper describes a systematic study on the clathrate structure of H+(H2O)21 using tandem mass spectrometry, vibrational predissociation spectroscopy, Monte Carlo simulations, and density functional theory calculations. We produced H+(H2O)n from a continuous corona-discharged supersonic expansion and observed three anomalies simultaneously at the cluster temperature near 150 K, including (1) the peak at n=21 is more intense than its neighboring ions in the mass spectrum, (2) the size-dependent dissociation fractions show a distinct drop for the 21-mer, and (3) the infrared spectrum of H+(H2O)21 exhibits only a single feature at 3699 cm-1, corresponding to the free-OH stretching of three-coordinated water molecules. Interestingly, the anomalies appear or disappear together with cluster temperature, indicating close correlation of these three observations. The observations, together with Monte Carlo simulations and density functional theory calculations, corroborate the notion for the formation of a distorted pentagonal dodecahedral (512) cage with a H2O molecule in the cage and a H3O+ ion on the surface for this “magic number” water cluster ion. The dodecahedral cage melts at higher temperatures, as evidenced by the emergence of a free-OH stretching feature at 3717 cm-1 for the two-coordinated water in H+(H2O)21 produced in a warmer molecular beam. Extension of this study to larger clusters strongly suggests that the experimentally observed isomer of H+(H2O)28 is most likely to consist of a distorted protonated pentakaidecahedral (51263) cage enclosing two neutral water molecules. [ABSTRACT FROM AUTHOR]

Detachment of heme prosthetic groups from gaseous myoglobin ions has been studied by collision-induced dissociation and infrared multiphoton dissociation in combination with Fourier-transform ion cyclotron resonance mass spectrometry. Multiply charged holomyoglobin ions (hMbn+) were generated by electrospray ionization and transferred to an ion cyclotron resonance cell, where the ions of interest were isolated and fragmented by either collision with Ar atoms or irradiation with 3 mum photons, producing apomyoglobin ions (aMbn+). Both charged heme loss (with [Fe(III)-heme]+ and aMb(n-1)+ as the products) and neutral heme loss (with [Fe(II)-heme] and aMbn+ as the products) were detected concurrently for hMbn+ produced from a myoglobin solution pretreated with reducing reagents. By reference to Ea = 0.9 eV determined by blackbody infrared radiative dissociation for charged heme loss of ferric hMbn+, an activation energy of 1.1 eV was deduced for neutral heme loss of ferrous hMbn+ with n = 9 and 10.

This paper describes a systematic study on the clathrate structure of (H+)(H2O)21 using tandem mass spectrometry, vibrational predissociation spectroscopy, Monte Carlo simulations, and density functional theory calculations. We produced (H+)(H2O)n from a continuous corona-discharged supersonic expansion and observed three anomalies simultaneously at the cluster temperature near 150 K, including (1) the peak at n=21 is more intense than its neighboring ions in the mass spectrum, (2) the size-dependent dissociation fractions show a distinct drop for the 21-mer, and (3) the infrared spectrum of (H+)(H2O)21 exhibits only a single feature at 3699 cm(-1), corresponding to the free-OH stretching of three-coordinated water molecules. Interestingly, the anomalies appear or disappear together with cluster temperature, indicating close correlation of these three observations. The observations, together with Monte Carlo simulations and density functional theory calculations, corroborate the notion for the formation of a distorted pentagonal dodecahedral (5(12)) cage with a H2O molecule in the cage and a H3O+ ion on the surface for this "magic number" water cluster ion. The dodecahedral cage melts at higher temperatures, as evidenced by the emergence of a free-OH stretching feature at 3717 cm(-1) for the two-coordinated water in (H+)(H2O)21 produced in a warmer molecular beam. Extension of this study to larger clusters strongly suggests that the experimentally observed isomer of (H+)(H2O)28 is most likely to consist of a distorted protonated pentakaidecahedral (5(12)6(3)) cage enclosing two neutral water molecules.